Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq257400 181 2e-40 seq253961 154 3e-32 seq262852 132 9e-26 seq250257 118 2e-21 seq260499 102 2e-16 seq48835 87.8 3e-12 seq262210 84.2 4e-11 >seq257400 Length=867372 Score = 181 bits (200), Expect = 2e-40 Identities = 568/870 (65%), Gaps = 21/870 (2%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||||| |||| || || ||| ||||| ||||| || || ||| ||||| || Sbjct 654697 ATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCT 654638 Query 42345 GAGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGAGAACG 42399 |||||| | || || ||||||||| | || |||||| | ||| ||||| | | Sbjct 654637 GAGGAGGTGGATCTTTCCAAGGACATTCAGCA--CTGGGAAGCCCTGAAGCCTGAGGA-G 654581 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | | |||| ||| | | || || ||||| || || ||| |||||||| |||| Sbjct 654580 AGATATTTTATATCACATG--TTCTAGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATG 654523 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTA 42517 | ||| ||| | || | |||| || ||| ||| || || ||||| ||||| Sbjct 654522 AAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAGATTACA--GAAGCCCGCTGTTTCTA 654465 Query 42518 CGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACAC 42577 |||||||| || ||||| || ||| | || || || |||| || || |||| Sbjct 654464 TGGCTTCCAAATTGCCATGGAAAACATACATTCCGAAATGTATAGTCTCCTTATCGACAC 654405 Query 42578 GTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTG 42637 ||||| ||| || || | | || ||||| || || || |||||||| || Sbjct 654404 TTACATTAAAGATTCCAAAGAAAGGGAATTTCTCTTCAATGCAATTGAAACGATGCCTTG 654345 Query 42638 CATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGG 42697 | | ||||||||||| |||||||| | ||||| | | || || || | || Sbjct 654344 CGTAAAGAAGAAGGCAGACTGGGCCTTGCGTTGGATTGGGGACAAAGAAGCTACCTATGG 654285 Query 42698 CGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTC 42757 || | | ||||| ||| | || || || || |||||||| || ||| | || || || Sbjct 654284 AGAACGTGTCGTAGCTTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGCTCTTTTGCATC 654225 Query 42758 CATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 |||||||||||| ||| | | | |||||| || ||||| || || || ||||| || Sbjct 654224 CATCTTCTGGCTTAAGAAACGAGGATTGATGCCTGGCCTCACATTTTCCAATGAACTTAT 654165 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAG 42877 ||||| || ||||| | || | ||||||||||||||| ||||| | ||||| Sbjct 654164 TAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTCATGTTC---AAACACCTGCT 654108 Query 42878 GCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAA 42937 ||||| || ||| | || | || | || || | | || || ||| || | Sbjct 654107 TCACAAACCTTCGGAACAGAGAGTAAAAGAAATAATTATCAATGCTGTTAGGATAGAACA 654048 Query 42938 GGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTG 42997 ||||||||| ||| || | |||| || ||| | || ||||| | | ||| Sbjct 654047 GGAGTTCCTTACGGAGGCCTTGCCTGTCAAGCTGATTGGAATGAATTGCACTTTAATGAA 653988 Query 42998 CAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGA--TGGGTCTCAGCCGCCTC 43055 ||||||| | | ||| || ||| || | ||| || ||||| ||||| | Sbjct 653987 GCAGTACATTGAATTCGTGGCAGACAGACT--TATGCTGGAACTGGGTTTCAGCAAGGTT 653930 Query 43056 TACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAAC 43115 | || | | ||||| |||||||||||||| || ||| |||| || ||||| ||| Sbjct 653929 TTCAGAGTGGAGAATCCCTTTGACTTTATGGAGAATATTTCGCTGGAAGGGAAGACAAAC 653870 Query 43116 TTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 || || |||||| | || | ||| || ||| Sbjct 653869 TTCTTTGAGAAGAGAGTAGGCGAGTATCAG 653840 >seq253961 Length=405542 Score = 154 bits (170), Expect = 3e-32 Identities = 247/355 (70%), Gaps = 0/355 (0%) Strand=Plus/Minus Query 42508 GCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAAC 42567 |||||||||| |||||||| || ||||| || ||| |||| ||||| |||| | Sbjct 310742 GCTGCTTCTATGGCTTCCAAATTGCCATGGAAAACATGCATTCTGAAATGTATAGTCTCC 310683 Query 42568 TGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGA 42627 | ||||||| ||||| ||| || || | | || ||||| || || || | Sbjct 310682 TTATCAACACTTACATTAACGATTCCAAAGAAAGGGAATTTCTCTTCAATGCAATTGAAA 310623 Query 42628 CGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG 42687 | ||||| ||| | ||||||||||| |||||||| | | ||||| | || || | Sbjct 310622 CAATGCCTTGCGTAAAGAAGAAGGCAGACTGGGCCTTGCATTGGATTGGGAACAAAGAAG 310563 Query 42688 CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCG 42747 || | || || | ||||||||| | || || || || |||||||| || || Sbjct 310562 TTACCTATGGAGAACATGTTGTAGCCTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGTT 310503 Query 42748 CCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGA 42807 | || || |||||||||||||||||| | | | |||||| || ||||| || || | Sbjct 310502 CTTTTGCATCCATCTTCTGGCTCAAGAAATGAGGATTGATGCCTGGCCTCACATTTTCCA 310443 Query 42808 ACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTT 42862 | ||||| || ||||| || ||||| | || | ||||||||||||||| |||| Sbjct 310442 ATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTCATGTT 310388 >seq262852 Length=263465 Score = 132 bits (146), Expect = 9e-26 Identities = 245/357 (69%), Gaps = 2/357 (1%) Strand=Plus/Minus Query 42508 GCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAAC 42567 |||||||||| |||||||| || |||| || ||| | || || || |||| || Sbjct 13375 GCTGCTTCTATGGCTTCCAAATTCCCATGGAAAACATACATTCGGAAATGTATAGTCTAC 13316 Query 42568 TGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGA 42627 | || |||| ||||| ||| || || | | || ||||| || || || | Sbjct 13315 TTATCGACACTTACATTAAAGATTCCAAAGAAAGGGAATTTCTCTTCAATGCAATTGAAA 13256 Query 42628 CGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG 42687 |||| || || | ||||||||||| || ||||| | | ||||| | || || | Sbjct 13255 CGATACCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCATTGGATTGGGAACAAAGAAG 13196 Query 42688 CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCG 42747 | || | || || | | ||||||||| | || || || || |||||||| || ||| Sbjct 13195 CTACCTATGGAGAATGTGTAGTAGCCTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGCT 13136 Query 42748 CCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCG 42806 | || | |||||||||||||||||| | |||| | ||| || || ||||| || | Sbjct 13135 CTTTTGGATCCATCTTCTGGCTCAAGAAACAAGGACT-GATACCTGGCCTCACATTTGCC 13077 Query 42807 AACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 || ||||| || ||||| || ||||| | || | ||||||||||||||| | ||| Sbjct 13076 AATGAACTTATTAGCAGAGATGAGGGTTTACACTGCGACTTTGCCTGCCTCATATTC 13020 >seq250257 Length=281617 Score = 118 bits (130), Expect = 2e-21 Identities = 459/713 (64%), Gaps = 24/713 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || ||||| || || ||| |||||||| ||||| ||| ||| | || | Sbjct 103871 CTAGCTTTCTTTGCAGCAGATGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGT 103812 Query 42483 AAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 |||| || ||| ||| || || ||||| ||||| |||||||| || ||||| || | Sbjct 103811 CAAGAAGTTCAGATTACA--GAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAA 103754 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCG 42597 || | || ||||| |||| | || || | |||| ||||| ||| || | Sbjct 103753 ACATACATTCTGAAATGTAT---AGTCTCCTTATTGACACTTACATTAAAGATTCCAAAG 103697 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 | | | || ||||| || || || | |||| ||| | ||||||||||| |||| Sbjct 103696 AAAGGGAATTTCTTTTCAATGCAATTGAAATGATGTTTTGCGTAAAGAAGAAGGCAGACT 103637 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||| | ||||| | | || || || | || || | | |||||||| Sbjct 103636 GGGCCTTGCGTTGGATTGGGGACAAAGAAGCTACCTATGGAGAATGTGTCATAGCCTTTG 103577 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAG 42776 | || || || || |||||||| || | | | || || |||||||||||||||||| | Sbjct 103576 CAGCAGTAGAAGGAATCTTCTTTTCTGACTCTTTTGCATCCATCTTCTGGCTCAAGAAAT 103517 Query 42777 AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 ||| | |||||| || ||||| || || || ||||| || ||||| || || || | Sbjct 103516 GAGGACT-GATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGATGAAGGTTTA 103458 Query 42837 CATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAG 42896 || | | | ||||| |||| ||||| | ||||| |||||||| | | | || Sbjct 103457 CACTGCAAGTCTGCCTACCTCATGTTC---AAACACCTGCTTCACAAGCCTTTGGAACAG 103401 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956 | || | || || | | || || ||| || |||||||||| | | || | Sbjct 103400 AGAGTAAAAGAAATAATTATCAATGCTGTTAGGATAGAACAGGAGTTCCTTATGGAGGCC 103341 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016 |||| ||| ||| | || ||||| | | ||| ||||||| | | ||| Sbjct 103340 TTGCCTGTGAAGCTGATTGGAATGAATTGCACTTTAATGAAGCAGTACATTGAATTCGTG 103281 Query 43017 GCCGACCATCTCCTGTGCCAGA--TGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCT 43074 || ||| || | || || ||||| ||||| | | || | | |||| Sbjct 103280 GCAGACAGACT--TAGGCTGGAACTGGGTTTCAGCAAGGTTTTCAGAGTGGAGAATCCCT 103223 Query 43075 TCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAG 43127 | ||||||| |||||| || ||||||| ||||||||||| || |||||| Sbjct 103222 TTGACTTTACGGAGAATATTTCGTTGG-----AAGACCAACTTCTTTGAGAAG 103175 >seq260499 Length=1869696 Score = 102 bits (112), Expect = 2e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || || |||||||| || ||| | || || || |||||||| Sbjct 725618 GTAGCCTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCGATCTTCTGT 725677 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 |||||| | | | | |||||| || ||||| || || || |||| || ||||| || Sbjct 725678 CTCAAGAAAAGAGGATTGATGCCTGGCCTCACATTTTCCAATGAACCTATTAGCAGAGAT 725737 Query 42828 GAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 ||||| | || | |||||||||||||| ||||| Sbjct 725738 GAGGGTTTACACTGCAACTTTGCCTGCCTCATGTTC 725773 >seq48835 Length=336802 Score = 87.8 bits (96), Expect = 3e-12 Identities = 291/443 (66%), Gaps = 16/443 (4%) Strand=Plus/Minus Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 ||||| || || ||| ||| || | || ||||| ||| ||| | |||| | Sbjct 232764 GCCTTTTTTGCAGCCAGTGATGGAACTGTAAATGAAAACTTGGTGGAGCGCTTCAGCCAG 232705 Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 ||| | ||| || ||||| ||||| ||||| || || || || ||| |||| || Sbjct 232704 GAGCTACAGGTCTCAGAGGCTCGCTGTTTCTATGGTTTTCAAATTCTCATCCAGAATGTT 232645 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGT 42602 ||||| ||| |||| | |||| | |||| |||||| |||||| | | Sbjct 232644 CACTCAGAGATGTAT---AGTTTGCTAATAGACACTTACATCAGAGATCCCAAGAAAAGG 232588 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | | || || || || || || ||||| | | | ||||| || || || ||||| Sbjct 232587 GAATTCTTATTTAATGCAATAGAAACAATGCCATACGTTAAGAAAAAAGCAGATTGGGC- 232529 Query 42663 CTCAACTG-GATCG-AGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 || || ||| | ||| | | | || || || || ||| |||| |||||| | | Sbjct 232528 CT----TGTGATAGCAGA-TAGAAAATCTACTTTTGGGGAAAGGGTGGTGGCCTTTGCTG 232474 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AG 42779 | | || || || || ||||| || | || || | || |||||| | ||| | | || Sbjct 232473 CTCTAGAAGGTATTTTTTTCTCAGGATCTTTTGCTGCTATATTCTGGTTAAAGAACAGAG 232414 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 || | ||||| |||||||| || || | |||||||||||||| || || ||||| || Sbjct 232413 GTCTT-ATGCCTGGACTCACTTTTTCCAGTGAACTCATCAGCAGAGATGAAGGGCTTCAC 232355 Query 42840 AGGGACTTTGCCTGCCTCCTGTT 42862 | ||||||| ||||| |||| Sbjct 232354 TGTGACTTTGTTTGCCTGATGTT 232332 >seq262210 Length=2098626 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || || || ||| | || |||||| | || || ||||| || || |||||||| | || Sbjct 1751752 TTAGGGGAAAGGGTTGTGGCCTTTGCTGCTGTAGAGGGTATTTTTTTCTCGGGATCTTTT 1751693 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 || | || |||||| | ||| ||| |||| | ||||| |||||||| || || || || Sbjct 1751692 GCTGCTATATTCTGGTTAAAGAAGAGAGGTCTT-ATGCCTGGACTCACTTTTTCCAATGA 1751634 Query 42812 ACTCATCAGCAGGGACGA 42829 |||||||||||| || || Sbjct 1751633 ACTCATCAGCAGAGATGA 1751616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941162867883840