Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq251882 100 3e-16 seq261394 93.3 4e-14 >seq251882 Length=196254 Score = 100 bits (110), Expect = 3e-16 Identities = 250/376 (66%), Gaps = 4/376 (1%) Strand=Plus/Plus Query 20209 CAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAA 20268 ||| || || | ||| || || || | || || |||| || | | ||| || || | Sbjct 179284 CAAAGTATGTACAAAGTCACCTGGCTTCAGGCCTGTAATGTGCCCGATCATGTAGGTAAG 179343 Query 20269 GAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATA 20328 || | ||||||||| ||||| ||| | || ||||| |||| ||| |||| | || || Sbjct 179344 CAGAGCATAGCTGGCGATGTTGAAATGCACACCCAAGCCCAAGTCCTCCGAACGTTGGTA 179403 Query 20329 CAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGG 20388 |||||| || || |||| | | | || || || || | | ||| || ||||| Sbjct 179404 CAGCTGGCACGAGAGCTG-CTGCTGCCCACGTACAACTGGTAGAGGGCGTGGCACGGCGG 179462 Query 20389 AAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTG 20448 || ||||||| || | || || ||||| |||||||| ||||||||||| || | Sbjct 179463 CAGAGCCATCA--GAAGA-TCTTTTGGATTCCAAGCACACATGATGATTCTTCTGTCATT 179519 Query 20449 CGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATA 20508 || || |||| ||| || | | | | || |||||| || ||||||| || Sbjct 179520 GGGGTTGGTTTTGATTGTGTCAATCACCTTCTGCAGTTGGTCTCCTCCTTGGCCTGAGTA 179579 Query 20509 GTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGG 20568 || | || | | || ||| | |||||||| ||||||| ||| || || |||| | Sbjct 179580 ATCTGAATTCACATCTTTGTATTCTGCCCCAAAATGCCTCCGCTGAAAGCCAGAAACCAG 179639 Query 20569 TCCCAAATCCCCCTCC 20584 ||||| || || ||| Sbjct 179640 GCCCAAGTCTCCTTCC 179655 >seq261394 Length=468452 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || | ||| || || | |||| ||||||||| ||||| ||||| || |||| ||| Sbjct 93290 TGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAAGGCACACCCAGGCCC 93349 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 ||||| ||||||| || ||||||||||| || ||||| ||| | || || || || Sbjct 93350 ATGTCCCCCGACCGTTGGTACAGCTGACACGAGAGCTCGCCGCTGCCCACGTAGAACTGG 93409 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 || | || || ||||| |||||||||| Sbjct 93410 CAGAGGGCATGGCACGGCGGCAGCGCCATCA 93440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 439888220518560