Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq249408 147 5e-30 seq78631 140 8e-28 seq237447 134 3e-26 seq261730 131 4e-25 seq256153 131 4e-25 seq243700 122 2e-22 seq251325 116 9e-21 seq93685 116 9e-21 seq254768 111 4e-19 seq262164 89.7 1e-12 >seq249408 Length=399222 Score = 147 bits (162), Expect = 5e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 143609 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 143668 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | ||| || || || |||||||| | ||| ||| | || Sbjct 143669 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 143728 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || |||||||| |||||||| | ||| | ||| || Sbjct 143729 ATTCCTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACC 143788 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || ||||| ||||| || ||||| || || ||||| ||||||||| || Sbjct 143789 TCAAGAGTGATGGTCTTTCCCGTCAGGGTTTTTACGAAAATCTGCATTTTG 143839 >seq78631 Length=346750 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 179186 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 179245 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | ||| || || || |||||||| | ||| ||| | || Sbjct 179246 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 179305 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || |||||||| |||||||| | ||| | ||| || Sbjct 179306 ATTCCTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACC 179365 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || ||||| || || ||||| |||||||| Sbjct 179366 TCAAGAGTGATGGTTTTTCCCGTCAGGGTTTTTACGAAAATCTGCAT 179412 >seq237447 Length=29837 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||||| Sbjct 13458 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAT 13399 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | ||| ||||| || |||||||| | ||| ||| | | Sbjct 13398 AAAGTACGTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGATGA 13339 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || |||||||| |||||| | | | | | ||| || Sbjct 13338 ATTCCTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTGTTGTACCCGAGGGTTCAACC 13279 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || ||||| || || || || |||||||| Sbjct 13278 TCAAGAGTGATGGTCTTTCCTGTCAGGGTTTTTACAAAAATCTGCAT 13232 >seq261730 Length=739691 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 78753 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 78694 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||||||||| | ||| || || || |||||||| | ||| ||| | || Sbjct 78693 AAAGTACGTCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 78634 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||| |||| |||||||| || || |||||||| |||||||| | ||| | || || Sbjct 78633 ATTGCTTCCTTATCCTGTATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGATCAACC 78574 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || ||||| || || ||||| ||||| || Sbjct 78573 TCAAGAGTGATGGTCTTTCCCGTCAGGGTTTTTACGAAAATCTGTAT 78527 >seq256153 Length=874984 Score = 131 bits (144), Expect = 4e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 288249 ACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAG 288308 ||| || ||||| | || ||||||| ||| || ||||| || || ||||| | | Sbjct 311666 ACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAA 311725 Query 288309 CGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGAT 288368 || ||||| ||||| | ||| || || || |||||||| | ||| ||| | || || Sbjct 311726 AGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGAACAGGAGGAAT 311785 Query 288369 TCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTC 288428 || ||| ||||||||||| || |||||||| |||||||| | ||| | ||| | || Sbjct 311786 TCTTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCATCCTC 311845 Query 288429 GAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || ||||| || || ||||| |||||||| Sbjct 311846 AAGAGTGATGGTCTTTCCTGTCAGGGTTTTTACGAAAATCTGCAT 311890 >seq243700 Length=14829 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||| ||| ||| || ||||| || || ||||| Sbjct 8897 CCACCACGAAGTCTCAACACAAGAAGAAGAGTGGACTCCTTTTGAATGTTGTAGTCACAC 8838 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||| ||||| | |||||| || || |||||||| | ||| ||| | || Sbjct 8837 AAAGTACTTCCATCTTCCAGTTGTTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 8778 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || |||||||| |||||||| | ||| | ||| || Sbjct 8777 ATTCCTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACC 8718 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||| || ||||| || || ||||| |||||||| Sbjct 8717 TCAAGAGTCATGATCTGTCCCGTCAGGGTTTTTACGAAAATCTGCAT 8671 >seq251325 Length=352111 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || | ||||| || || ||||| || || ||||| | Sbjct 311078 CCACCATGAAGTCTCAACACAATATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 311137 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||| ||||| | ||| || || || |||||||| | ||||||| | || Sbjct 311138 AAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGGA 311197 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||||||||||| | |||| || ||||| || |||||||| | ||| ||||| || Sbjct 311198 ATTCCTTCTTTATTCCGGATCTTGGCTTTTACATTTTCTATTGTATCTGAGGATTCAACC 311257 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || |||| || | ||| |||||||| Sbjct 311258 TCAAGAGTGATGGTCTTTCCCATCGGAGTTTTTATGAAAATCTGCAT 311304 >seq93685 Length=1386 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| ||||| ||||| || || || | Sbjct 575 CCACCCCGGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAC 634 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || |||||||| || | ||| || | || Sbjct 635 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGGGGA 694 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| || || || ||||| || || | || || | ||||| Sbjct 695 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCTACC 754 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 755 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 801 Score = 113 bits (124), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || | ||| | || || || || | ||| ||| || ||||| || || | Sbjct 799 CATG-CCTCCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAAT 857 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| ||||| |||||||| | || || || || ||||| || | ||| || | Sbjct 858 CAGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAG 917 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || ||||||||||| || || || ||||| || || | || || | | Sbjct 918 GGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCT 977 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 978 CCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1029 Score = 109 bits (120), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || | ||| | || || || || | ||| ||| || ||||| || || | Sbjct 1027 CATG-CCTCCCCTGAGGCGCAGGACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAAT 1085 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| ||||| || ||||| | || || || || ||||| || | ||| || | Sbjct 1086 CAGAGAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAG 1145 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || ||||||||||| || || || ||||| || || | || || | | Sbjct 1146 GGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCT 1205 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 1206 CCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1257 >seq254768 Length=650996 Score = 111 bits (122), Expect = 4e-19 Identities = 167/236 (71%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || | ||| | || || || || | ||| ||| || ||||| || || | Sbjct 218199 CATG-CCTCCCCTGAGGCGCAGGACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAAT 218257 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| ||||| || ||||| | || || || || ||||| || | ||| || | Sbjct 218258 CAGAGAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAG 218317 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || ||||||||||| || || || ||||| || || | || || | | Sbjct 218318 GGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCT 218377 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 | || || || ||||| ||||| || ||||| ||||| ||||| ||||||||| || Sbjct 218378 CCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTG 218433 Score = 107 bits (118), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| ||||| ||||| || || || | Sbjct 217975 CCACCCCGGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAC 218034 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || |||||||| || | ||| || | || Sbjct 218035 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGA 218094 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| || || || ||||| || || | || || | || || Sbjct 218095 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 218154 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 218155 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 218201 >seq262164 Length=887232 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 || ||||||| | || || ||||| || || ||||| | | || ||||| ||||| Sbjct 793346 ACAAGATGAAGCATGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 793287 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 | ||| || || || |||||||| | ||| ||| || ||| |||| ||||||||| Sbjct 793286 AGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCGGGAGGAATTTCTTCCTTATCCTGG 793227 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTT 288443 || || ||||||| |||||| | | ||| | ||| || || ||| |||| ||||| Sbjct 793226 ATCTTGGCTTTCAAATTTTCTGTTGTATCCAAAGGTTCAACCTCAAGCATGATGGTCTT 793168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175587377778952