Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq78631 98.7 1e-15 seq251325 93.3 4e-14 seq249408 93.3 4e-14 seq243700 93.3 4e-14 seq260417 89.7 5e-13 seq261730 84.2 2e-11 seq237447 84.2 2e-11 >seq78631 Length=346750 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| || |||||| || || ||||| || || | | Sbjct 179219 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 179278 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| || || ||||| || ||||| || || ||| || ||| | Sbjct 179279 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTCACA 179338 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | | || ||||| | || | ||||| || ||||| |||||| Sbjct 179339 TTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGTTTTTCCCGTCAGGGTTTTT 179398 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 179399 ACGAAAATCTGCAT 179412 >seq251325 Length=352111 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| || ||||| || || ||||| || || | | Sbjct 311111 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCA 311170 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | |||||| || ||||| || |||||||| | ||| || ||||| Sbjct 311171 AAGATCAGTCTCTGTTGATCAGGAGGAATTCCTTCTTTATTCCGGATCTTGGCTTTTACA 311230 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | || || ||||| | || | || || || || |||||||| Sbjct 311231 TTTTCTATTGTATCTGAGGATTCAACCTCAAGAGTGATGGTCTTTCCCATCGGAGTTTTT 311290 Query 138601 ACAAAAATCTGCAT 138614 | ||||||||||| Sbjct 311291 ATGAAAATCTGCAT 311304 >seq249408 Length=399222 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| || |||||| || || ||||| || || | | Sbjct 143642 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 143701 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| || || ||||| || ||||| || || ||| || ||| | Sbjct 143702 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTCACA 143761 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | | || ||||| | || | || || || ||||| |||||| Sbjct 143762 TTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGTCTTTCCCGTCAGGGTTTTT 143821 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 143822 ACGAAAATCTGCAT 143835 >seq243700 Length=14829 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| | || ||||| || || |||||||| || | | Sbjct 8864 GACTCCTTTTGAATGTTGTAGTCACACAAAGTACTTCCATCTTCCAGTTGTTTGCCAGCA 8805 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| || || ||||| || ||||| || || ||| || ||| | Sbjct 8804 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTCACA 8745 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | | || ||||| | |||| | | || ||||| |||||| Sbjct 8744 TTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTCATGATCTGTCCCGTCAGGGTTTTT 8685 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 8684 ACGAAAATCTGCAT 8671 >seq260417 Length=1194950 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||||| || | || | | | |||||||| || |||||||||||| | Sbjct 431930 CCCCCTCTAAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 431871 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || |||| | |||| | | ||| ||||| || || Sbjct 431870 AGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGG 431811 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | |||||| | | ||||||| Sbjct 431810 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 431751 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | |||||||| || | ||||| ||||| |||||||| Sbjct 431750 TCGAGGGTGATAGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCAT 431704 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| | ||| |||| || | || | | | ||||| || || |||||||||||| | Sbjct 432386 CCGCCCCTCAAGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGTATGTTGTAGTCGGAC 432327 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || |||| | |||| | | ||| ||||| || || Sbjct 432326 AGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGG 432267 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | |||||| | | ||| ||| Sbjct 432266 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACC 432207 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || |||||||| || || || ||||||||||| Sbjct 432206 TCGAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAAATCTGCAT 432160 >seq261730 Length=739691 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| || |||||| ||| || ||||| || || | | Sbjct 78720 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCGTCTTCCAGTTGCTTGCCAGCA 78661 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| || || ||||| || |||| || || || || ||| | Sbjct 78660 AAGATCAGTCTCTGCTGATCAGGAGGAATTGCTTCCTTATCCTGTATCTTGGCTTTCACA 78601 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | | || ||||| | || | || || || ||||| |||||| Sbjct 78600 TTTTCTATTGTATCCGAGGGATCAACCTCAAGAGTGATGGTCTTTCCCGTCAGGGTTTTT 78541 Query 138601 ACAAAAATCTGCAT 138614 || |||||||| || Sbjct 78540 ACGAAAATCTGTAT 78527 >seq237447 Length=29837 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||||||||||||| | |||||| || || ||||| || || | | Sbjct 13425 GACTCCTTTTGAATGTTGTAGTCGGATAAAGTACGTCCATCTTCCAGTTGCTTTCCAGCA 13366 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| || || ||| | || ||||| || || ||| || ||| | Sbjct 13365 AAGATCAGTCTCTGCTGATCAGGATGAATTCCTTCCTTATCCTGGATCTTGGCTTTCACA 13306 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| || | | | || ||||| | || | || || || ||||| |||||| Sbjct 13305 TTTTCTGTTGTACCCGAGGGTTCAACCTCAAGAGTGATGGTCTTTCCTGTCAGGGTTTTT 13246 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 13245 ACAAAAATCTGCAT 13232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494593196604480