Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq78631 109 4e-19 seq249408 104 2e-17 seq243700 104 2e-17 seq237447 102 6e-17 seq251325 100 2e-16 seq43725 84.2 2e-11 >seq78631 Length=346750 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| || || || ||||| |||||||| || Sbjct 179186 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 179245 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | ||| || || ||| Sbjct 179246 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 179305 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| ||| ||| ||||||| ||||| ||| || Sbjct 179306 ATTCCTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACC 179365 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || |||||||| || ||||| |||||||| ||||| ||||| || Sbjct 179366 TCAAGAGTGATGGTTTTTCCCGTCAGGGTTTTTACGAAAATCTGCATCTT 179415 >seq249408 Length=399222 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| || || || ||||| |||||||| || Sbjct 143609 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 143668 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | ||| || || ||| Sbjct 143669 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 143728 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| ||| ||| ||||||| ||||| ||| || Sbjct 143729 ATTCCTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACC 143788 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || ||||| |||||||| ||||| ||||| || Sbjct 143789 TCAAGAGTGATGGTCTTTCCCGTCAGGGTTTTTACGAAAATCTGCATTTT 143838 >seq243700 Length=14829 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | | |||| || || || ||||| |||||||| || | Sbjct 8897 CCACCACGAAGTCTCAACACAAGAAGAAGAGTGGACTCCTTTTGAATGTTGTAGTCACAC 8838 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | || | ||||| | |||||||||||| | |||| | ||| || || ||| Sbjct 8837 AAAGTACTTCCATCTTCCAGTTGTTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 8778 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| ||| ||| ||||||| ||||| ||| || Sbjct 8777 ATTCCTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACC 8718 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||| | | || ||||| |||||||| ||||| ||||| || Sbjct 8717 TCAAGAGTCATGATCTGTCCCGTCAGGGTTTTTACGAAAATCTGCATCTT 8668 >seq237447 Length=29837 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| || || || ||||| |||||||| ||| Sbjct 13458 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAT 13399 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| || ||||| | |||| | ||| || || || Sbjct 13398 AAAGTACGTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGATGA 13339 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| ||| ||| ||||| | ||| | ||| || Sbjct 13338 ATTCCTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTGTTGTACCCGAGGGTTCAACC 13279 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || | || ||||| || |||||||| |||||||||||||| ||||| ||| Sbjct 13278 TCAAGAGTGATGGTCTTTCCTGTCAGGGTTTTTACAAAAATCTGCATCTTT 13228 >seq251325 Length=352111 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 311078 CCACCATGAAGTCTCAACACAATATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 311137 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | |||||| || ||| Sbjct 311138 AAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGGA 311197 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || | | || ||| ||||||| ||||||| ||||| ||| || Sbjct 311198 ATTCCTTCTTTATTCCGGATCTTGGCTTTTACATTTTCTATTGTATCTGAGGATTCAACC 311257 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || || ||||||||| ||||| ||||| || Sbjct 311258 TCAAGAGTGATGGTCTTTCCCATCGGAGTTTTTATGAAAATCTGCATCTT 311307 >seq43725 Length=1898 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || ||||| || ||||| || |||||||| ||| || | | ||||||| Sbjct 1558 ACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCC 1499 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | ||||| | ||| ||||| || || ||||||||||| Sbjct 1498 AGCTGCTTCCCAGCAAAGATCAATCTCTGCTGGTCAGAGGGGATGCCTTCCTTGTCTTGG 1439 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || ||| | || | || || || ||||| || | ||||||||| || Sbjct 1438 ATCTTGGCCTTGACATTCTCAGTGGTGTCACTGGGCTCTACCTCGAGGGTAATGGTCTTC 1379 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || ||||| || ||||| Sbjct 1378 CCAGTCAGGGTCTTCACAAAGATCTGCAT 1350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356219946784940