Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq93685 114 1e-20 seq254768 111 1e-19 seq260417 105 6e-18 seq78631 104 2e-17 seq249408 100 3e-16 seq243700 95.1 1e-14 seq43725 95.1 1e-14 seq256153 82.4 7e-11 >seq93685 Length=1386 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||| || | || |||||||| || || |||||||| | Sbjct 575 CCACCCCGGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAC 634 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || |||||| |||| | | |||||| || || || Sbjct 635 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGGGGA 694 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| ||| ||| || ||||| | |||| |||||| | ||| || Sbjct 695 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCTACC 754 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || | ||| | || ||||||||||| || || || || ||||||||| || Sbjct 755 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATGCCT 805 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || || || || || || |||||||| | ||||| Sbjct 815 CGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCG 874 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||| | | |||||| || || || ||||||||||| Sbjct 875 TCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTA 934 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| |||||| | ||| || || | ||| | Sbjct 935 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 994 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || ||||| ||||| || || || || ||||||||| || Sbjct 995 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGCCT 1033 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || || || || || || |||||||| | ||||| | Sbjct 1043 CGCAGGACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA 1102 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||| | | |||||| || || || ||||||||||| Sbjct 1103 TCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTA 1162 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| |||||| | ||| || || | ||| | Sbjct 1163 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 1222 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || ||||| ||||| || || || || ||||||||| || Sbjct 1223 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGCCT 1261 >seq254768 Length=650996 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||| || | || |||||||| || || |||||||| | Sbjct 217975 CCACCCCGGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAC 218034 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || |||||| |||| | | |||||| || || || Sbjct 218035 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGA 218094 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| ||| ||| || ||||| | |||| |||||| | ||| || Sbjct 218095 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 218154 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || | ||| | || ||||| ||||| || || || || ||||||||| || Sbjct 218155 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGCCT 218205 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || || || || || || |||||||| | ||||| | Sbjct 218215 CGCAGGACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA 218274 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||| | | |||||| || || || ||||||||||| Sbjct 218275 TCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTA 218334 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| |||||| | ||| || || | ||| | Sbjct 218335 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 218394 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || || || |||||||| Sbjct 218395 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 218429 >seq260417 Length=1194950 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || |||| |||| || | || |||||||| || || ||||| ||| || ||||| Sbjct 432377 AAGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGTATGTTGTAGTCGGACAGGGTGCGG 432318 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || ||||| || || || ||||||||| |||||| || || || ||||| ||| Sbjct 432317 CCATCCTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCTTCC 432258 Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075 ||||| ||| || ||||| | || | |||||| | ||| || |||| ||| Sbjct 432257 TTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTG 432198 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || || ||||| || || || ||||||||||| Sbjct 432197 ATGGTCTTCCCAGTCAGGGTCTTCACGAAAATCTGCAT 432160 >seq78631 Length=346750 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | || ||||| |||||||| ||||| || Sbjct 179183 GCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCA 179242 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || || ||||| |||||| || ||||||||| ||| Sbjct 179243 GACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGA 179302 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || || | | ||| | || |||| || Sbjct 179303 GGAATTCCTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCA 179362 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | ||||| || ||||| |||||||| ||||||||||| Sbjct 179363 ACCTCAAGAGTGATGGTTTTTCCCGTCAGGGTTTTTACGAAAATCTGCAT 179412 >seq249408 Length=399222 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | || ||||| |||||||| ||||| || Sbjct 143606 GCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCA 143665 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || || ||||| |||||| || ||||||||| ||| Sbjct 143666 GACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGA 143725 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || || | | ||| | || |||| || Sbjct 143726 GGAATTCCTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCA 143785 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | || || || ||||| |||||||| ||||||||||| Sbjct 143786 ACCTCAAGAGTGATGGTCTTTCCCGTCAGGGTTTTTACGAAAATCTGCAT 143835 >seq243700 Length=14829 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | | | | || ||||| |||||||| ||||| || Sbjct 8900 GCACCACCACGAAGTCTCAACACAAGAAGAAGAGTGGACTCCTTTTGAATGTTGTAGTCA 8841 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || || | ||| || || ||||| ||||| |||||| || ||||||||| ||| Sbjct 8840 CACAAAGTACTTCCATCTTCCAGTTGTTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGA 8781 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || || | | ||| | || |||| || Sbjct 8780 GGAATTCCTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCA 8721 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | |||| | | || ||||| |||||||| ||||||||||| Sbjct 8720 ACCTCAAGAGTCATGATCTGTCCCGTCAGGGTTTTTACGAAAATCTGCAT 8671 >seq43725 Length=1898 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || || ||||| | Sbjct 1336 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 1277 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| ||||||||| |||||| || || || |||||||||||| Sbjct 1276 TCTTCCAGCTGCTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 1217 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||||| | || |||||| | ||| || || | ||| | Sbjct 1216 TCTTGGATCTTGGCCTTGACATTCTCAGTGGTGTCACTGGGCTCCACCTCAAGGGTGATA 1157 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || || | ||||| ||||| |||||||| Sbjct 1156 GTTTTACCCGTTAAGGTTTTCACAAAGATCTGCAT 1122 >seq256153 Length=874984 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 126889 ACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCAT 126948 ||| || | || |||||| | ||| | || ||||| |||||||| ||||| || || Sbjct 311666 ACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAA 311725 Query 126949 CGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTAT 127008 || || ||| || || || || ||||| |||||| || ||||||| | ||||| || Sbjct 311726 AGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGAACAGGAGGAAT 311785 Query 127009 GCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTC 127068 | ||||| ||| ||| || || | | ||| | || |||| || | || Sbjct 311786 TCTTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCATCCTC 311845 Query 127069 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || || || ||||| |||||||| ||||||||||| Sbjct 311846 AAGAGTGATGGTCTTTCCTGTCAGGGTTTTTACGAAAATCTGCAT 311890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473901429284160