Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq253248 154 2e-32 seq252333 98.7 1e-15 >seq253248 Length=169641 Score = 154 bits (170), Expect = 2e-32 Identities = 205/285 (72%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| || |||||||| || ||||| || || || | || || || | ||| Sbjct 90456 AAGGGACAGCCTTTCACATTATTGCAGATGAGAGATTGGATTGAGGCTGTGTTGATGATT 90397 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | |||||| || || || || ||||| || |||||||| | || || || ||| Sbjct 90396 TTAAAACCTGTTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTCAGGAGAACATATGGGA 90337 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 ||| ||||||| |||||||| || |||||||| |||| || | ||| ||||||| ||| Sbjct 90336 TTCCCCATGAGTCCTTTCAAAGAGAACGGAGCTCCCATTTCTACCATGGTCTCACCAAAG 90277 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 ||||| | ||||| || ||||| || | | ||| || || || | ||| || | | Sbjct 90276 ATGGCGTCTGGACGAGGCTTTTCTACCAGCAGAGCAGGATACAGCTCCATAGCATCAATG 90217 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || || ||||| |||| ||||| ||||| ||||||||||| ||| Sbjct 90216 TCCCCGTAGAGCTCTTCTAACTCCGCAGCCATCTCCTTCTCTCCT 90172 Score = 116 bits (128), Expect = 5e-21 Identities = 134/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| ||||||||| | |||||| | |||||| | ||| ||| | || Sbjct 87781 TCTTACCCCATGACCCAATCCTTTGGTGAAACCTGGTCCTTGTTTGTGATCTGTCTTGAA 87722 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| || |||||||| ||||| Sbjct 87721 AAACTGATGGGTGAAGTGCTGAGCAAAGAACGCAAACATCATATTTGTGCCCTGAGGATC 87662 Query 10241 GGGGATAAAGGTCCTCCGAATAA-AAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 |||||| || | || | | || ||||||| |||||||||| | ||||||| || || Sbjct 87661 GGGGATGAACTTTCTTCTTAGAAGAAACTTT-TCCACAATCTCTTTTGAATCAGGAAG 87605 Score = 109 bits (120), Expect = 8e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10384 CTATCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTC 10443 || ||||||||||| || | ||||| ||||||||| || |||||||| || | ||| Sbjct 87177 CTCTCACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCCACCGGAGGAAGGGCTCTG 87118 Query 10444 GTATAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAG 10503 ||||||||||| || || ||||| ||||||||||| ||||| ||||| | | || || Sbjct 87117 GTATAATAGGAGAGGTTGGAAAACGCTTCCCAGCTTTTGTAACCATACTGCACATTATAA 87058 Query 10504 AGCGGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||| ||||||| | ||||| ||| Sbjct 87057 GTTGGTGGACTCTCAATCAAATGTGACCTTGCT 87025 Score = 105 bits (116), Expect = 1e-17 Identities = 196/286 (69%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || | ||||| |||||||| || |||| | ||||| | | | | Sbjct 89474 CCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAAGCCCGTGTTCCAGTAATAAA 89415 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| | || |||| || || | | ||| | || |||| |||| Sbjct 89414 GAGTTGTTGTAGAGAAACTGTTTATAGTTGTATTCCTGGTCACTGATTTGAAAGGTATCA 89355 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| ||||||| || || ||||| || || || ||||| |||||| Sbjct 89354 GGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATGCGGTTTTGGTAC 89295 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| ||| || | |||||||||||| | || | |||||| || || | Sbjct 89294 TGGAATTGTTGGTT--GAAAAGCAGCTCCGGGTCAAACTTCAGTTTGAAGTGATAGCCAC 89237 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | |||||| ||||| | | || | ||| ||||| || || || Sbjct 89236 TCAATTGCTGTACATAATCTTCAATCACAATCTTAATAGTCTCTCC 89191 >seq252333 Length=163683 Score = 98.7 bits (108), Expect = 1e-15 Identities = 172/248 (69%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || |||| || |||| || || || || ||||||| ||||||||| Sbjct 51961 GTGGCTGTCTTGACAATGTTGAAGCCTATCTCACCACCAAACGTGCTGGACTTCCAGTAC 52020 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || |||| | ||| | | ||| || || | |||||| |||||||| | || Sbjct 52021 TCTGGAGAACAGACGGGATTCCCTAGGAGGCCCTTGAGGGAAAAAGGAGCCCCAATTTCT 52080 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111 || || ||||| || ||||||| || | || || | || |||||| | ||| Sbjct 52081 ATCATACTCTCCCCAAAGATGGAGTTTGGGTGGCACTTCTCAA-GAAGAAGCCCCGGGTA 52139 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || |||| ||| ||||| | | |||| ||| || || ||||||||||| Sbjct 52140 GAACTCCAGGGCATCGATGTCTCCATACAACTCCTCCAGCTCAGCTGCCATCTCCTTCTC 52199 Query 9172 ACCTACAA 9179 ||||||| Sbjct 52200 TCCTACAA 52207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 721293704685600