Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq260417 141 1e-28 seq93685 138 1e-27 seq254768 132 5e-26 seq43725 109 6e-19 seq263758 87.8 2e-12 >seq260417 Length=1194950 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||| ||||| |||| || |||||| ||||| ||||||||||| Sbjct 431930 CCCCCTCTAAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 431871 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||| ||||| || ||||| | ||||||||| | || Sbjct 431870 AGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGG 431811 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||| |||||| ||||| || | | ||||| || | ||||| Sbjct 431810 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 431751 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | ||||| ||||| ||||| | ||||| |||||||| |||||| Sbjct 431750 TCGAGGGTGATAGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCATT 431703 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||| ||||| |||| || ||| || ||||| ||||||||||| Sbjct 432158 CCCCCTCTAAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 432099 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||| ||||| || ||||| | ||||||||| | || Sbjct 432098 AGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGG 432039 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||| |||||| ||||| || | | ||||| || | ||||| Sbjct 432038 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 431979 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | |||||||| || || ||||| || || || ||||| |||||| Sbjct 431978 TCGAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCATT 431931 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || || |||| ||||| |||| || ||| || || || ||||||||||| Sbjct 432386 CCGCCCCTCAAGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGTATGTTGTAGTCGGAC 432327 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||| ||||| || ||||| | ||||||||| | || Sbjct 432326 AGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGG 432267 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||| |||||| ||||| || | | ||||| || | || || Sbjct 432266 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACC 432207 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | |||||||| || || ||||| || || || || || |||||| Sbjct 432206 TCGAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAAATCTGCATT 432159 >seq93685 Length=1386 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | |||| |||||| |||| || ||||| ||||| ||||| || | Sbjct 801 TGCCTCCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAG 860 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| |||| || ||||||||||| || || || | | ||||||||| | | Sbjct 861 AGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGG 920 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||| ||| |||||| ||||| || | | ||||| || | |||| Sbjct 921 GGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCA 980 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 981 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1029 Score = 125 bits (138), Expect = 8e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | |||| ||||| || | || ||||| ||||| ||||| || | Sbjct 1029 TGCCTCCCCTGAGGCGCAGGACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCAG 1088 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||||||||| || || || | | ||||||||| | | Sbjct 1089 AGAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGG 1148 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||| ||| |||||| ||||| || | | ||||| || | |||| Sbjct 1149 GGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCA 1208 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 1209 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1257 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||| || ||| || ||||| ||||| || || |||||||| | Sbjct 587 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGACAGAGTGCGGCCA 646 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| || | | ||||||||| | || | || |||||| Sbjct 647 TCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTA 706 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| || | | ||||| || | || || |||| |||||| Sbjct 707 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATG 766 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| || || || ||||| ||||| Sbjct 767 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 801 >seq254768 Length=650996 Score = 132 bits (146), Expect = 5e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | |||| ||||| || | || ||||| ||||| ||||| || | Sbjct 218201 TGCCTCCCCTGAGGCGCAGGACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCAG 218260 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||||||||| || || || | | ||||||||| | | Sbjct 218261 AGAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGG 218320 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||| ||| |||||| ||||| || | | ||||| || | |||| Sbjct 218321 GGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCA 218380 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | |||| |||||||| ||||| ||||| || || || ||||| ||||||||| Sbjct 218381 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTG 218433 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||| || ||| || ||||| ||||| || || |||||||| | Sbjct 217987 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGACAGAGTGCGGCCA 218046 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| || | | ||||||||| | || | || |||||| Sbjct 218047 TCCTCCAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTA 218106 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| || | | ||||| || | ||||| |||| |||||| Sbjct 218107 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 218166 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| || || || ||||| ||||| Sbjct 218167 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 218201 >seq43725 Length=1898 Score = 109 bits (120), Expect = 6e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||||||||| || ||||| |||| || |||||||| || || || Sbjct 1541 CTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCTGCTTCCCAGCAAA 1482 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | || |||||||| |||||| ||||| | Sbjct 1481 GATCAATCTCTGCTGGTCAGAGGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 1422 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || | || || || | || ||||| || || ||||| || || || Sbjct 1421 CTCAGTGGTGTCACTGGGCTCTACCTCGAGGGTAATGGTCTTCCCAGTCAGGGTCTTCAC 1362 Query 46582 AAAGATTTGCATT 46594 |||||| |||||| Sbjct 1361 AAAGATCTGCATT 1349 >seq263758 Length=155273 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/215 (69%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||| || ||| |||||||| ||||| || || ||||||| || Sbjct 104926 CGCAGGACCAGGTGCAGAGTGGACTCTTTTTGGATGTTGTAATCAGACAGAGTGCAGCCG 104867 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||| ||| || ||||| || | | ||||||||||| || | || ||||| Sbjct 104866 TCTTCCAGCTACTTCCCTGCGAAAATGAGCCTCTGCTGGTCGG-GGGGATGCCTTCCTTA 104808 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||| ||| | || | ||||| || | ||||| |||| | |||| Sbjct 104807 TCCTGCATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGGGATG 104748 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||| |||| || || |||||||| ||||| Sbjct 104747 ATCTTGTTGGTCACGGTCTTCACAAAGATCTGCAT 104713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563337192379680