Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq260417 114 8e-21 seq43725 107 1e-18 seq254768 104 2e-17 seq93685 104 2e-17 seq78631 84.2 1e-11 >seq260417 Length=1194950 Score = 114 bits (126), Expect = 8e-21 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 432140 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 432081 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || | || |||||||| | || | || |||||||| Sbjct 432080 AGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGG 432021 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || |||| ||| ||||| | Sbjct 432020 ATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCT 431963 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||| ||||||||||| Sbjct 431962 TCCCAGTCAGGGTCTTCACGAAGATCTGCAT 431932 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 431912 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 431853 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || | || |||||||| | || | || |||||||| Sbjct 431852 AGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGG 431793 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || |||| ||| || |||| Sbjct 431792 ATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATAGTTT 431735 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| | || ||||||||||||||||| Sbjct 431734 TACCCGTTAAGGTTTTCACAAAGATCTGCAT 431704 >seq43725 Length=1898 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | || |||| ||| | ||| |||||||| ||||| ||||| || Sbjct 1804 CCACCCCTCAAGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 1745 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | | | || |||||||| || |||||||| || | || |||||||| | || Sbjct 1744 AGGGTGTGGCCGTCTTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGG 1685 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| |||||| | | | |||| || ||| || Sbjct 1684 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAGTGGTGTCACTGGGCTCTACC 1625 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| ||| ||||| || || | || |||||||| ||||||||||| Sbjct 1624 TCGAGGGTGATGGTCTTCCCGGACAGGGTCTTCACGAAGATCTGCAT 1578 Score = 105 bits (116), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||||| ||||| ||||| || ||| | || | || ||| Sbjct 1558 ACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCC 1499 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || | || |||||||| || | || |||||||| Sbjct 1498 AGCTGCTTCCCAGCAAAGATCAATCTCTGCTGGTCAGAGGGGATGCCTTCCTTGTCTTGG 1439 Query 34893 ATCTTCTGTTTGACGGATGCTA--TCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || | | |||| || ||| || |||| ||| ||||| | Sbjct 1438 ATCTTGGCCTTGAC--ATTCTCAGTGGTGTCACTGGGCTCTACCTCGAGGGTAATGGTCT 1381 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||||||||||||||| Sbjct 1380 TCCCAGTCAGGGTCTTCACAAAGATCTGCAT 1350 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 1330 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 1271 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || | || |||||||| | || | ||||||||||| Sbjct 1270 AGCTGCTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 1211 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || | | |||| || ||| || || | ||| || |||| Sbjct 1210 ATCTTGGCCTTGAC--ATTCTCAGTGGTGTCACTGGGCTCCACCTCAAGGGTGATAGTTT 1153 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| | || ||||||||||||||||| Sbjct 1152 TACCCGTTAAGGTTTTCACAAAGATCTGCAT 1122 >seq254768 Length=650996 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| | | || |||| ||| | ||| ||| ||||| ||||| || || || Sbjct 218203 CCTCCCCTGAGGCGCAGGACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGAG 218262 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 218263 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGG 218322 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||| || ||||| |||||| | || | |||| || ||| || Sbjct 218323 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 218382 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | ||| ||||| || || || || |||||||| ||||||||||| || Sbjct 218383 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 218432 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| || || || || | || |||| ||| Sbjct 217993 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGACAGAGTGCGGCCATCCTCC 218052 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || | |||||||| | || | |||||||| || Sbjct 218053 AGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGG 218112 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 218113 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 218172 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| ||||||||||| Sbjct 218173 CCAGTCAGGGTCTTCACGAAGATCTGCAT 218201 >seq93685 Length=1386 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| | | || |||| ||| | ||| ||| ||||| ||||| || || || Sbjct 1031 CCTCCCCTGAGGCGCAGGACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGAG 1090 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 1091 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGG 1150 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||| || ||||| |||||| | || | |||| || ||| || Sbjct 1151 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 1210 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || || || |||||||| ||||||||||| Sbjct 1211 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1257 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| | | || |||| ||| | ||| ||| ||||| ||||| || || || Sbjct 803 CCTCCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGAG 862 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || | || |||||||| || || ||||| || || | |||||||| | || Sbjct 863 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 922 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||| || ||||| |||||| | || | |||| || ||| || Sbjct 923 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 982 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || || || |||||||| ||||||||||| Sbjct 983 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1029 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| || || || || | || |||| ||| Sbjct 593 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGACAGAGTGCGGCCATCCTCC 652 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || | |||||||| | || | |||||||| || Sbjct 653 AGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGG 712 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 713 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTG 772 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| ||||||||||| Sbjct 773 CCGGTCAGGGTCTTCACGAAGATCTGCAT 801 >seq78631 Length=346750 Score = 84.2 bits (92), Expect = 1e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||| || | |||| ||| || || |||||||| ||||| || | | ||| || Sbjct 179198 CTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA 179257 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || ||||| || || || ||||| || |||| ||||| || | || | || ||||| Sbjct 179258 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTA 179317 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||||| ||| || | |||| | || || ||||| || | || ||| Sbjct 179318 TCCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATG 179377 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGT 34987 ||||||||||| || || || || || |||||||| || || Sbjct 179378 GTTTTTCCCGTCAGGGTTTTTACGAAAATCTGCATCTTGGT 179418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323568976688352