Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq260357 122 2e-23 seq259686 118 3e-22 seq250175 118 3e-22 seq252703 116 1e-21 seq39485 113 1e-20 seq80414 109 2e-19 seq241122 107 5e-19 seq244366 98.7 3e-16 seq258863 87.8 5e-13 seq252485 84.2 6e-12 seq261263 82.4 2e-11 >seq260357 Length=355543 Score = 122 bits (134), Expect = 2e-23 Identities = 196/276 (71%), Gaps = 17/276 (6%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | |||||||||||| ||| ||||||| | || || || || || || | | Sbjct 322230 TTCCTTCTGGATGTTATGGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 322289 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||||| ||| || || ||||||||||| |||| Sbjct 322290 TAGATGTAGGAGCTGGTGTCATAGATGAAGACTATAGAGGAAATGTTGGTGTTGTGTTAT 322349 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134 |||||||| || || ||| ||| | | || |||||| | ||||| ||| | | Sbjct 322350 TTAATTTTGGCACAGAAAAG---TTTGAAGTGAAAAAGGGTGATTGAATTGCACAGCTGA 322406 Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATT 1188 |||||| || || ||||| ||||| ||||||| ||| ||| || || | Sbjct 322407 TTTGTG--AACGC-ATTTTTTTATCCA--CAAATAGAGGAAGTTCAAGTTTTGGATGTCA 322461 Query 1189 CGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 | ||||||||||| | ||| ||||| || || |||| Sbjct 322462 CTGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAA 322497 >seq259686 Length=587844 Score = 118 bits (130), Expect = 3e-22 Identities = 195/276 (71%), Gaps = 18/276 (7%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | |||||||||||| ||| ||||||| | || || || || || || | | Sbjct 439381 TTCCTTCTGGATGTTATGGAAGAGTAGCTCCATGTTCTGGCTTGGCTGCAAAACACTTCA 439322 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||||| ||| || || ||||||||||| |||| Sbjct 439321 TAGATGTAGGAGCTGGTGTCATAGATGAAGACTATAGAGGAAATGTTGGTGTTGTGTTAT 439262 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134 |||||||| || || ||| ||| | | || |||||| | ||||| ||| | | Sbjct 439261 TTAATTTTGGCACAGAAAAG---TTTGAAGTGAAAAAGGGTGATCGAATTGCACAGCTGA 439205 Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATT 1188 |||||| || || ||||| ||||| |||||| ||| ||| || || | Sbjct 439204 TTTGTG--AACGCATTTTTT--ATCCA--GAAATAGAGGAAGTTCAAGTTTTGGATGTCA 439151 Query 1189 CGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 | ||||||||||| | ||| ||||| || || |||| Sbjct 439150 CTGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAA 439115 >seq250175 Length=443462 Score = 118 bits (130), Expect = 3e-22 Identities = 195/276 (71%), Gaps = 18/276 (7%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | |||||||||||| ||| ||||||| | || || || || || || | | Sbjct 398019 TTCCTTCTGGATGTTATGGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 398078 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||||| ||| || || ||||||||||| |||| Sbjct 398079 TAGATGTAGGAGCTGGTGTCATAGATGAAGACTATAGAGGAAATGTTGGTGTTGTGTTAT 398138 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134 |||||||| || || ||| ||| | | || |||||| | ||||| ||| | | Sbjct 398139 TTAATTTTGGCACAGAAAAG---TTTGAAGTGAAAAAGGGTGATCGAATTGCACAGCTGA 398195 Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATT 1188 |||||| || || ||||| ||||| |||||| ||| ||| || || | Sbjct 398196 TTTGTG--AATGCATTTTTT--ATCCA--GAAATAGAGGAAGTTCAAGTTTTGGATGTCA 398249 Query 1189 CGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 | ||||||||||| | ||| ||||| || || |||| Sbjct 398250 CTGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAA 398285 >seq252703 Length=225757 Score = 116 bits (128), Expect = 1e-21 Identities = 197/277 (71%), Gaps = 20/277 (7%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | |||||||||| | ||| ||||||| | || || || || || || | | Sbjct 208398 TTCCTTCTGGATGTTATAGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 208457 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||||| ||| || || ||||||||||| |||| Sbjct 208458 TAGATGTAGGAGCTGGTGTCATAGATGAAGACTATAGAGGAAATGTTGGTGTTGTGTTAT 208517 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGA-GGTGATAGGATTGCTCAGTTA 1133 |||||||| || || ||| ||| | | | |||| |||||| | ||||| ||| | Sbjct 208518 TTAATTTTGGCACAGAAAAG---TTTGA-AGTGAAAGAGGGTGATCGAATTGCACAGCTG 208573 Query 1134 ATTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGAT 1187 ||||||| || || ||||| ||||| |||||| ||| ||| || || | Sbjct 208574 ATTTGTG--AACGCATTTTTT--ATCCA--GAAATAGAGGAAGTTCAAGTTTTGGATGTC 208627 Query 1188 TCGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 | ||||||||||| | ||| ||||| || || |||| Sbjct 208628 ACTGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAA 208664 >seq39485 Length=23403 Score = 113 bits (124), Expect = 1e-20 Identities = 196/277 (71%), Gaps = 20/277 (7%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | |||||||||||| ||| ||||||| | || || || || || || | | Sbjct 18376 TTCCTTCTGGATGTTATGGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 18317 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||| || || ||||| ||| || || ||||||||||| |||| Sbjct 18316 TAGATGTAGGAAGTGGTGTCATAAATGAAGACTATAGAGGAAATGTTGGTGTTGTGTTAT 18257 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGA-GGTGATAGGATTGCTCAGTTA 1133 |||||||| || || ||| ||| | | | ||| | |||||| | ||||| ||| | Sbjct 18256 TTAATTTTGGCACAGAAAAG---TTTGA-AGTGCAAAAGGGTGATCGAATTGCACAGCTG 18201 Query 1134 ATTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TT----CCTTAGAGGAT 1187 ||||||||| | | ||||| ||||| |||||| ||| || | || || | Sbjct 18200 ATTTGTGAACA--CATTTTTT--ATCCA--GAAATAGAGGAAGTTCAAGCTTTGGATGTC 18147 Query 1188 TCGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 | ||||||||||| | ||| ||||| ||||| |||| Sbjct 18146 ACTGAAAGGGGTTCAGGAGGTTTTGGTTCTACTGGAA 18110 >seq80414 Length=59647 Score = 109 bits (120), Expect = 2e-19 Identities = 193/276 (70%), Gaps = 18/276 (7%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | |||||||||||| ||| ||||||| | ||||| || || || || | | Sbjct 2997 TTCCTTCTGGATGTTATGGAAGAGTAGCTCCATGTTCCGGCTTGGCTGCAAAACACTTCA 2938 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||||| ||| || || ||| ||||||| |||| Sbjct 2937 TAGATGTAGGAGCTGGTGTCATAGATGAAGACTATAGAGGAAATGTTAGTGTTGTGTTAT 2878 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134 || ||||| || || ||| ||| | | || || ||| | ||||| ||| | | Sbjct 2877 TTGATTTTGGCACAGAAAAG---TTTGAAGTGAAAAAGGGAGATCGAATTGCACAGCTGA 2821 Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATT 1188 |||||| || || ||||| ||||| |||||| ||| ||| || ||| Sbjct 2820 TTTGTG--AACGCATTTTTT--ATCCA--GAAATAGAGGAAGTTCAAGTTTTGAAGGTCA 2767 Query 1189 CGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 | ||||||||||| | ||| ||||| || || |||| Sbjct 2766 CTGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAA 2731 >seq241122 Length=19232 Score = 107 bits (118), Expect = 5e-19 Identities = 193/276 (70%), Gaps = 17/276 (6%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | |||||||||| | ||| ||||||| || || || || || || | | | Sbjct 2804 TTCCTTCTGGATGTTATTGAAGAGTAGCTCCACTTTCTGGCTTGGCTGCAAAACATTTCA 2745 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||||| ||| || || ||||||||||| |||| Sbjct 2744 TAGATGTAGGAGCTGGTGTCATAGATGAAGACTATAGAGGAAATGTTGGTGTTGTGTTAT 2685 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134 |||||||| || || ||| ||| | | || |||||| | ||||| ||| | | Sbjct 2684 TTAATTTTGGCACAGAAAAG---TTTGAAGTGAAAAAGGGTGATCGAATTGCACAGCTGA 2628 Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TT----CCTTAGAGGATT 1188 ||| || ||||| ||||| ||||| |||||| ||| || | || || | Sbjct 2627 TTTATG--AAGGC-ATTTTTTTATCCA--GAAATAGAGGAAGTTCAAGCTTTGGAAGTCA 2573 Query 1189 CGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 | ||||||||||| ||| ||||| || || |||| Sbjct 2572 CTGAAAGGGGTTCATGAGGTTTTGGTTCCACTGGAA 2537 >seq244366 Length=91849 Score = 98.7 bits (108), Expect = 3e-16 Identities = 188/271 (69%), Gaps = 17/271 (6%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | |||||||||||| ||| |||||| | || || || || || || | | | Sbjct 64430 TTCCTTCTGGATGTTATGGAAGAGCAGCTCCATGTTCTGGCTTGGCTGCAAAACATTTCA 64371 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||||| ||| || || ||||||||||| |||| Sbjct 64370 TAGATGTAGGAGCTGGTGTCATAGATGAAGACTATAGAGGAAATGTTGGTGTTGTGTTAT 64311 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134 | |||||| || || ||| ||| | | || |||||| ||||| ||| | | Sbjct 64310 TCAATTTTGGCACAGAAAAG---TTTGAAGTGAAAAAGGGTGATCAAATTGCGCAGCTGA 64254 Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATT 1188 |||||| || || ||||| ||||| |||||| ||| ||| || || | Sbjct 64253 TTTGTG--AATGC-ATTTTTTTATCCA--GAAATAGAGGAAGTTCAAGTTTTGGATGTCA 64199 Query 1189 CGGAAAGGGGTTCTGCAGGATTTGGGTCTAC 1219 | ||||||||||| | ||| ||| | || || Sbjct 64198 CTGAAAGGGGTTCAGGAGGTTTTAGTTCCAC 64168 >seq258863 Length=301830 Score = 87.8 bits (96), Expect = 5e-13 Identities = 133/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||||||||| || ||| ||||||| | || || || || || || | | Sbjct 166405 TTCCTTCTGGATGTTACGGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 166464 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| | ||| ||||| | | || || ||||||||||| |||| Sbjct 166465 TAGATGTAGGAGCTGGTGTCGTAGATGAAGACTATGGAGGAAATGTTGGTGTTGTGTTAT 166524 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134 |||||||| || || ||| ||| | | || |||||| | ||||| ||| | | Sbjct 166525 TTAATTTTGGCACAGAAAAG---TTTGAAGTGAAAAAGGGTGATCGAATTGCACAGCTGA 166581 Query 1135 TTTGTGAA 1142 ||||| || Sbjct 166582 TTTGTCAA 166589 >seq252485 Length=623806 Score = 84.2 bits (92), Expect = 6e-12 Identities = 187/273 (68%), Gaps = 16/273 (6%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||||||||||| ||| ||||||| | || || || || || || | | | Sbjct 253502 TTCCTTCTGGATGTTATGTAAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAACACT-TCA 253560 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || ||| |||| | ||| ||| | ||| || || ||||||||| ||| Sbjct 253561 TAGATGTAGGAGCTAGTGTCGTAGATGAAGATTATAGAGGAAA---TGGTGTTGTGCTAT 253617 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137 |||||||| || | | | ||| | | || |||||| | ||||| ||| | |||| Sbjct 253618 TTAATTTTGGCAAAGAATG-TTTGAGGTGAAAAAGGGTGATGGAATTGCACAGCTGATTT 253676 Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATTCGG 1191 ||| || || ||||| ||||| |||||| ||| ||| || || | | | Sbjct 253677 GTG--AATGC-ATTTTTTTATCCA--GAAATAGAGGAAGTTCAAGTTTTGGATGTCACTG 253731 Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 |||||||||| | ||| ||||| || || |||| Sbjct 253732 AAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAA 253764 >seq261263 Length=199556 Score = 82.4 bits (90), Expect = 2e-11 Identities = 186/274 (68%), Gaps = 13/274 (5%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCC-GGATTAGCGGCTAAGTTTATG 1016 |||| | |||||||||||| ||| ||||||| || | || || || || || | Sbjct 188780 TTCCTTCTGGATGTTATGGAAGAGTAGCTCCACTGTTCTGGCTTGGCTGCAAAACACTTC 188721 Query 1017 ATTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTA 1076 || ||||| || |||||||| || ||| ||| | ||| || || |||| |||||| || Sbjct 188720 ATAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGCGGAAATGTTGATGTTGTGCTA 188661 Query 1077 TTTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATT 1136 ||||||||| || | || ||| | | ||| ||||| | ||| | ||| | ||| Sbjct 188660 TTTAATTTTGGCAAAGAGAAGTTTGAAGTGAAAAGGGGTGAATGAATTTCACAGCTGATT 188601 Query 1137 TGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATTCG 1190 | || || || ||||| || || |||||| | | ||| ||||| | | Sbjct 188600 TTTG--AATGCATTTTTT--ATACA--GAAATAGAGAAAGTTCAAGTTTTAGATGTCACT 188547 Query 1191 GAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 ||||||||||| | || ||||| || || |||| Sbjct 188546 GAAAGGGGTTCAGGAGCTTTTGGTTCCACTGGAA 188513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138238460629104