Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq78631 113 3e-20 seq249408 105 5e-18 seq251325 98.7 8e-16 seq256153 89.7 4e-13 seq93685 87.8 1e-12 seq254768 82.4 6e-11 >seq78631 Length=346750 Score = 113 bits (124), Expect = 3e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || ||| ||| |||||||| ||||| ||||| | | | || | || Sbjct 179200 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 179259 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| ||| ||||| | |||| || ||||| || Sbjct 179260 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 179319 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| ||| ||| | | | || || | || ||||| | || || || Sbjct 179320 CTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGT 179379 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||||||||||| |||||||| |||||||||||| || Sbjct 179380 TTTTCCCGTCAGGGTTTTTACGAAAATCTGCATCTTG 179416 >seq249408 Length=399222 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || ||| ||| |||||||| ||||| ||||| | | | || | || Sbjct 143623 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 143682 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| ||| ||||| | |||| || ||||| || Sbjct 143683 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 143742 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| ||| ||| | | | || || | || ||||| | || || || Sbjct 143743 CTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGT 143802 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||||| |||||||| ||||||||||| Sbjct 143803 CTTTCCCGTCAGGGTTTTTACGAAAATCTGCAT 143835 >seq251325 Length=352111 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || || ||| |||||||| ||||| ||||| | | | | | || Sbjct 311092 CAACACAATATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATC 311151 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| ||||||||| | |||| || || || | Sbjct 311152 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGGAATTCCTTCTTTATT 311211 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 | ||||| ||||||| | | | ||||| | || ||||| | || || || Sbjct 311212 CCGGATCTTGGCTTTTACATTTTCTATTGTATCTGAGGATTCAACCTCAAGAGTGATGGT 311271 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| || |||||||| |||||||||||| || Sbjct 311272 CTTTCCCATCGGAGTTTTTATGAAAATCTGCATCTTG 311308 >seq256153 Length=874984 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || ||| ||| |||||||| ||||| ||||| | | | || | || Sbjct 311678 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 311737 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| ||| ||| | | |||| | ||||| || Sbjct 311738 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGAACAGGAGGAATTCTTTCCTTATC 311797 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| ||| ||| | | | || || | || |||| | || || || Sbjct 311798 CTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCATCCTCAAGAGTGATGGT 311857 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||||| |||| |||||||| |||||||||||| || Sbjct 311858 CTTTCCTGTCAGGGTTTTTACGAAAATCTGCATCTTG 311894 >seq93685 Length=1386 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| ||||| || || ||| || || || || ||||||||||| Sbjct 802 GCCTCCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGA 861 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || |||| |||| |||||| || ||||| || || | ||| || || | ||| Sbjct 862 GAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGG 921 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||| || ||||| || || | | | || | |||||| Sbjct 922 GATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 981 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || || || |||||||| Sbjct 982 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1029 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| |||| || |||| |||| || || ||| |||||| || || ||||||||||| Sbjct 574 GCCACCCCGGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 633 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| |||||| || || || || || | ||| || || | ||| Sbjct 634 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGGGG 693 Query 48659 AACGCCCTCCTTGTC 48673 || ||||||||| || Sbjct 694 AATGCCCTCCTTATC 708 >seq254768 Length=650996 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| |||| || |||| |||| || || ||| |||||| || || ||||||||||| Sbjct 217974 GCCACCCCGGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 218033 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| |||||| || || || || || | ||| || || | ||| Sbjct 218034 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGG 218093 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||| || ||||| || || | | | || | |||||| Sbjct 218094 AATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 218153 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || || || |||||||| Sbjct 218154 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 218201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379688329902132