Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq257400 176 8e-39 seq261608 168 1e-36 seq258363 145 1e-29 seq250257 111 3e-19 seq253961 109 1e-18 seq262852 100 5e-16 seq260499 91.5 3e-13 >seq257400 Length=867372 Score = 176 bits (194), Expect = 8e-39 Identities = 552/844 (65%), Gaps = 17/844 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| ||||||||||||||||||||||| |||| ||| || ||||| Sbjct 653840 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTTGTCTTCCCTTCCAGCGAAATATTCTC 653899 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956 ||| ||| ||||| || | | | | | || || | | |||| |||||||| Sbjct 653900 CATAAAGTCAAAGGGATTC--TCCACTCTGAAAACCTTGCTGAAACCCA---GTTCCAGC 653954 Query 47957 AGGTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 | | || || ||| | || ||||| | ||| | ||| ||||| || || Sbjct 653955 ATAAGTCTGTCTGCCACGAATTCAATGTACTGCTTCATTAAAGTGCAATTCATTCCAATC 654014 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || || ||||| |||| || || ||||||| |||||| || || | | Sbjct 654015 AGCTTGACAGGCAAGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACAGCATTGATAATT 654074 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGG-CATAGAGCATGCA 48132 || | || || | || || ||||||| ||||||| ||| ||| ||| ||| Sbjct 654075 ATTTCTTTTACTCTCTGTTCCGAAGGTTTGTGAAGCAGGTGTTTGAACAT-GAG---GCA 654130 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 ||||||||| | ||| || || || || | ||| || || | ||||| || ||| || Sbjct 654131 GGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCC 654190 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 |||||| | || | | || |||||||| || | || ||||||||||| |||||||| Sbjct 654191 AGGCATCAATCCTCGTTTCTTAAGCCAGAAGATGGATGCAAAAGAGCCAGAAAAGAAGAT 654250 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 || || ||||| || || || || | ||||| | | ||| | ||||| || Sbjct 654251 TCCTTCTACTGCTGCAAAAGCTACGACACGTTCTCCATAGGTAGCTTCTTTGTCCCCAAT 654310 Query 48313 CC-AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371 || | | ||| |||||||||||||||||||| | ||| |||||||| || || || || Sbjct 654311 CCAACGCAAG-GCCCAGTCTGCCTTCTTCTTTACGCAAGGCATCGTTTCAATTGCATTGA 654369 Query 48372 AGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 |||| | | || | || || || || || || ||||| | Sbjct 654370 AGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCGATAAGGAGACTATACATTT 654429 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | || || | || || || || || ||||| || ||||| | ||| || | || Sbjct 654430 CGGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCT 654489 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 | |||||| | |||| ||||| || || ||||| ||||| ||||| || |||| Sbjct 654490 GAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAA 654549 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCT 48611 |||| || || |||||| | |||| | ||| | | | || || | |||| || Sbjct 654550 AGAAAGCTAGAACATGTGATATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCT 654609 Query 48612 GTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGT 48671 | | ||| ||| || ||||| || || | ||||| ||||| || ||||| || | Sbjct 654610 GAATGTCCTTGGAAAGATCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTAT 654669 Query 48672 ACAT 48675 |||| Sbjct 654670 ACAT 654673 >seq261608 Length=1386124 Score = 168 bits (186), Expect = 1e-36 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| | || ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 704063 AGCAGTTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 704122 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | ||||| | ||||| || ||||| || | |||||| |||||| Sbjct 704123 TCCCGGAGGAGGCCGGCGGTGCTCGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCACC 704182 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| || |||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 704183 TTGTCCTCCAGGCGTGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 704242 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | || || ||| | |||||||| |||||||| ||||| | ||| || Sbjct 704243 CGGTTCCGCAGCCGTTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATATTGATTGGG 704302 Query 241625 GAC 241627 ||| Sbjct 704303 GAC 704305 >seq258363 Length=1744174 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | ||||| | ||| Sbjct 450934 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGGAGGCTGGCGGTGGACGCCAGC 450993 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||||| |||||| ||||||||||| || | |||||| ||||| Sbjct 450994 TCCGTGTTCTGGCTCTTGAGCGTCTTCACCTTCTCCTCCAGGCGTGAGATGCGCTCCAGC 451053 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||||| Sbjct 451054 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 451113 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 451114 ATGCGCTCCTGCGTGTCCATGTCGATGGGGGAC 451146 >seq250257 Length=281617 Score = 111 bits (122), Expect = 3e-19 Identities = 541/847 (64%), Gaps = 29/847 (3%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 || || || || |||| |||||||||||||| ||||||| ||||| || |||||| Sbjct 103158 TGATACTCGCCTGCTCTCTTCTCAAAGAAGTTGGTCTTCC-----AACGAAATATTCTCC 103212 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC- 47956 | ||| ||||| || | | | | | || || | | |||| |||||||| Sbjct 103213 GTAAAGTCAAAGGGATTC--TCCACTCTGAAAACCTTGCTGAAACCCA---GTTCCAGCC 103267 Query 47957 --AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 || || || ||| | || ||||| | ||| | ||| ||||| || || | Sbjct 103268 TAAGTCTGTCTGCCACGAATTCAATGTACTGCTTCATTAAAGTGCAATTCATTCCAATCA 103327 Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 | ||| ||||| |||| | || ||||||| |||||| || || | | | Sbjct 103328 GCTTCACAGGCAAGGCCTCCATAAGGAACTCCTGTTCTATCCTAACAGCATTGATAATTA 103387 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGG-CATAGAGCATGCAG 48133 | | || || | || | || |||| ||||||| ||| ||| ||| | || Sbjct 103388 TTTCTTTTACTCTCTGTTCCAAAGGCTTGTGAAGCAGGTGTTTGAACAT-GAG---GTAG 103443 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 ||| | | | ||| || ||||| || | ||| || || | ||||| || ||| ||| Sbjct 103444 GCAGACTTGCAGTGTAAACCTTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCA 103503 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | | ||||||||||| || | || |||||| |||| |||||||| Sbjct 103504 GGCATCAGTCCTCATTTCTTGAGCCAGAAGATGGATGCAAAAGAGTCAGAAAAGAAGATT 103563 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 || || ||||| || || || ||| | ||||| | | ||| | ||||| ||| Sbjct 103564 CCTTCTACTGCTGCAAAGGCTATGACACATTCTCCATAGGTAGCTTCTTTGTCCCCAATC 103623 Query 48314 C-AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 | | | ||| |||||||||||||||||||| | ||| |||| | || || || ||| Sbjct 103624 CAACGCAAG-GCCCAGTCTGCCTTCTTCTTTACGCAAAACATCATTTCAATTGCATTGAA 103682 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACAT 48429 || | | || | || || || || | | || || | ||||| Sbjct 103683 AAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACT---ATACAT 103739 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||||| || | || || || || || ||||| || ||||| | ||| || | Sbjct 103740 TTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAAT 103799 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||| |||||| |||| ||||| || || ||||| ||||| ||||| || || Sbjct 103800 CTGAACTTCTTGACTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCATCTGCTGC 103859 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC 48609 |||||| || || |||||| | |||| | ||| | | | || || | |||| Sbjct 103860 AAAGAAAGCTAGAACATGTGATATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTG 103919 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTT-T 48668 ||| | ||| ||| || ||||| || || || |||| ||||| || |||||| | Sbjct 103920 CTGAATGTCCTTGGAAAGATCCACCTCCTCAACTATCCAAAAGGAAGCCTCCGCTTTTCT 103979 Query 48669 TGTACAT 48675 | ||||| Sbjct 103980 TATACAT 103986 >seq253961 Length=405542 Score = 109 bits (120), Expect = 1e-18 Identities = 313/478 (65%), Gaps = 5/478 (1%) Strand=Plus/Plus Query 48092 TCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAG 48151 || || ||||||| ||||||| || | | | | |||||||||||| | ||| || Sbjct 310361 TCCGAAGGTTTGTGAAGCAGGTGTTT---AAACATGAGGCAGGCAAAGTCACAGTGTAAA 310417 Query 48152 CCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGT 48211 || || || | ||| || || | ||||| || ||| |||||||| | || | | Sbjct 310418 CCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAATCCTCATTTC 310477 Query 48212 TTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAAC 48271 ||||||||||| || | || ||||| ||||| |||||||| || || ||||| || || Sbjct 310478 TTGAGCCAGAAGATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAG 310537 Query 48272 GCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC-AGGAAAGCGCCCAGTC 48330 || | ||||| | | | | | |||| |||| | | ||| |||||||| Sbjct 310538 GCTACAACATGTTCTCCATAGGTAACTTCTTTGTTCCCAATCCAATGCAAG-GCCCAGTC 310596 Query 48331 TGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACC 48390 |||||||||||| | ||| ||||| || || || || |||||| | | || Sbjct 310597 TGCCTTCTTCTTTACGCAAGGCATTGTTTCAATTGCATTGAAGAGAAATTCCCTTTCTTT 310656 Query 48391 TGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTAT 48450 | || || || || ||| || ||||| ||||| |||| || || || Sbjct 310657 GGAATCGTTAATGTAAGTGTTGATAAGGAGACTATACATTTCAGAATGCATGTTTTCCAT 310716 Query 48451 AGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCT 48510 || || ||||| || |||||| | ||| || | ||| |||||| | ||| Sbjct 310717 GGCAATTTGGAAGCCATAGAAGCAGCAGGCTTCCGTAATCTGAACTTCTTGGCTAAATAG 310776 Query 48511 CTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGT 48568 ||||| || || | ||| ||||| ||||| || ||||||| || || |||||| Sbjct 310777 CTCCACCAAGTTTTGATTTACTATGCCATCACTTGCTGCAAAGACAGCTAGAACATGT 310834 >seq262852 Length=263465 Score = 100 bits (110), Expect = 5e-16 Identities = 355/544 (65%), Gaps = 17/544 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| ||||||||||| || |||||||| |||| || || ||||| Sbjct 12741 CTGATACTCGCCTACTCTCTTCTCAAAGAAATTGGTCTTCCCTTCCAGTGAAATTTTCTC 12800 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956 ||| ||| ||||| || | | | | | || || | | |||| |||||||| Sbjct 12801 CATAAAGTCAAAGGGATTC--TCCACTCTGAAAACCTTGCTGAAACCCA---GTTCCAGC 12855 Query 47957 AGGTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 | | || || | | || ||||| | ||| | || ||||| || || Sbjct 12856 ATAAGTCTGTCTGCCATGAGTTCAATGTACTGCTTCATTAAAGTACAATTCATTCCAATC 12915 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || || ||||| |||| ||| || ||||||| |||||| || | || | Sbjct 12916 AGCTTGACAGGCAAGGCCTCTGTAAGGAACTCCTGTTCTATCCTAACAGATTTGATAATT 12975 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATA-GAGCATGCA 48132 || | || || | || | ||||||| ||||||| ||| ||| ||| ||| Sbjct 12976 ATTTCTTTTACTCTCTCTTCCAAAGGTTTGTGAAGCAGGTGTTTGA-ATATGAG---GCA 13031 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 ||||||||| | ||| || || || || | ||| || || | |||| || ||| || Sbjct 13032 GGCAAAGTCGCAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGCAAATGTGAGGCC 13091 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||| || | || | ||||||||||| || | | ||||||||||| |||||||| Sbjct 13092 AGGTATCAGTCCTTGTTTCTTGAGCCAGAAGATGGATCCAAAAGAGCCAGAAAAGAAGAT 13151 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 || || ||||| || || || | | ||||| | | ||| | |||| || Sbjct 13152 TCCTTCTACTGCTGCAAAGGCTACTACACATTCTCCATAGGTAGCTTCTTTGTTCCCAAT 13211 Query 48313 CC-AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371 || | | ||| ||||| |||||||||||||| | || || ||||| || || || || Sbjct 13212 CCAATGCAAG-GCCCAATCTGCCTTCTTCTTTACACAAGGTATCGTTTCAATTGCATTGA 13270 Query 48372 AGAG 48375 |||| Sbjct 13271 AGAG 13274 >seq260499 Length=1869696 Score = 91.5 bits (100), Expect = 3e-13 Identities = 132/183 (72%), Gaps = 5/183 (3%) Strand=Plus/Minus Query 48092 TCTGAGGGTTTGTTGCGCAGGTGCTTGG-CATAGAGCATGCAGGCAAAGTCCCTGTGCAA 48150 ||||| ||||||| ||||||| ||| ||| ||| ||||||||||| | ||| || Sbjct 725799 TCTGAAGGTTTGTGAAGCAGGTGTTTGAACAT-GAG---GCAGGCAAAGTTGCAGTGTAA 725744 Query 48151 GCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTG 48210 || || || | ||| || | | ||||| || ||| |||||||| | || || | Sbjct 725743 ACCCTCATCTCTGCTAATAGGTTCATTGGAAAATGTGAGGCCAGGCATCAATCCTCTTTT 725684 Query 48211 TTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAA 48270 ||||| ||||| || | || ||||||||||| |||||||| || || ||||| || || Sbjct 725683 CTTGAGACAGAAGATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAA 725624 Query 48271 CGC 48273 || Sbjct 725623 GGC 725621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928399542850560