Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq257400 147 4e-30 seq253961 131 3e-25 seq262852 105 1e-17 seq260499 96.9 6e-15 seq48835 91.5 3e-13 >seq257400 Length=867372 Score = 147 bits (162), Expect = 4e-30 Identities = 553/862 (64%), Gaps = 31/862 (4%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||| ||||| ||| | || ||||| || || ||| | ||| Sbjct 654685 GATATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGAT 654626 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGAC-GAGCAGC-ATTTTCTCA 25591 || |||||||||| | |||| | || || ||| | ||| || || || | Sbjct 654625 CTTTCCAAGGACATTCAGCACTGGGAAGCCCTG----AAGCCTGAGGAGAGATATTTTAT 654570 Query 25592 AGTACGTGTTG--GCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA 25649 | || |||| || ||||||||||| |||||| ||||| || || || || || Sbjct 654569 ATCACATGTTCTAGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGA 654510 Query 25650 GAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATG 25707 | |||| | | ||||| ||| ||| || ||| |||||||| || ||||| || Sbjct 654509 GCGATTTAGCCAAGAAGTTCAGATTACA--GAAGCCCGCTGTTTCTATGGCTTCCAAATT 654452 Query 25708 GCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACA 25764 ||||| ||||| | || || || ||||| | || || || || ||||||| | Sbjct 654451 GCCATGGAAAACATACATTCCGAAATGTAT---AGTCTCCTTATCGACACTTACATTAAA 654395 Query 25765 GACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824 || | || || || || || ||| || || || || || | |||| | Sbjct 654394 GATTCCAAAGAAAGGGAATTTCTCTTCAATGCAATTGAAACGATGCCTTGCGTAAAGAAG 654335 Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC-GCTACGTTTGGCGAGCGGCT 25883 ||||| |||||| || ||||| | || || ||||| | ||| || || | Sbjct 654334 AAGGCAGACTGGGCCTTGCGTTGGATTGGG-GACAAAGAAGCTACCTATGGAGAACGTGT 654276 Query 25884 GGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTG 25943 ||||| ||||| || || || || ||||| || || || ||||| |||||||||| Sbjct 654275 CGTAGCTTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCCATCTTCTG 654216 Query 25944 GCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 ||| ||| | | | ||| ||||| || || |||||||| || || || ||||| | Sbjct 654215 GCTTAAGAA-ACGAGGATTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAG 654157 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAAC 26062 | |||||| | ||| | || ||||||||||| | | || ||| |||| ||||||| Sbjct 654156 ATGAGGGTTTACACTGTGACTTTGCCTGCCTCATGTTCA---AACACCTGCTTCACAAAC 654100 Query 26063 CTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTC 26122 |||| || ||| || | || || | | ||||| ||| || ||||||| | Sbjct 654099 CTTCGGAACAGAGAGTAAAAGAAATAATTATCAATGCTGTTAGGATAGAACAGGAGTTCC 654040 Query 26123 NNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACA 26182 | || ||||| || | |||| || |||| Sbjct 654039 TTACGGAGGCCTTGCCTGTCAAGCTGATTGGAATGAATTGCACTTTAATGAAGCAGTACA 653980 Query 26183 TTGAGTATGTGGCCGAC---CATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTA 26239 |||| | ||||| ||| | | ||||| | ||||| || || | | ||| Sbjct 653979 TTGAATTCGTGGCAGACAGACTTATGCTG---GAACTGGGTTTCAGCAAGGTTTTCAGAG 653923 Query 26240 CGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTG 26299 | || || || ||||||||||| || || ||| ||||||||||||| |||||||||| Sbjct 653922 TGGAGAATCCCTTTGACTTTATGGAGAATATTTCGCTGGAAGGGAAGACAAACTTCTTTG 653863 Query 26300 AAAAGAGGGTCGGCGACTATCA 26321 | ||||| || ||||| ||||| Sbjct 653862 AGAAGAGAGTAGGCGAGTATCA 653841 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 || || || ||||||||||| || || ||| ||||||||||||| ||||||||||| ||| Sbjct 655780 AATCCCTTTGACTTTATGGAGAATATTTCGCTGGAAGGGAAGACAAACTTCTTTGAGAAG 655721 Query 26305 AGGGTCGGCGACTATCA 26321 || || ||||| ||||| Sbjct 655720 AGAGTAGGCGAGTATCA 655704 >seq253961 Length=405542 Score = 131 bits (144), Expect = 3e-25 Identities = 412/624 (66%), Gaps = 22/624 (4%) Strand=Plus/Minus Query 25452 CATCTTGCAGGTAACACACAAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAA 25511 |||||| | ||| | || | ||||| ||| ||||||| ||||| ||| | || Sbjct 310974 CATCTTTCCTATAAAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGTCTTCCTT 310915 Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTAT-CCA 25570 ||||| || || ||| | ||||| |||||||||| | ||| | || | | || Sbjct 310914 TTGGACAGCTGAGGAGGTGGATCTTTCCAAGGACATTCAGCACTGTGAAGCCCGAAGCCT 310855 Query 25571 AAGACGAGCAGCATTTTCTCAAGTACGTGTTG--GCATTCTTTGCAGCCTCTGATGGTAT 25628 || ||| || ||||| | | || |||| || |||||||||| |||||| || Sbjct 310854 GAGGAGAG-AG-ATTTTAT--ATCACATGTTCTAGCTGTCTTTGCAGCAAGTGATGGCAT 310799 Query 25629 AGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAG 25686 ||| || | || || ||| ||| | | ||||| ||| |||| || ||| Sbjct 310798 AGTAAATCAAAACTTGGTGGAGCTATTTAGCCAAGAAGTTCAGATTACG--GAAGCCTGC 310741 Query 25687 TGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTT 25746 || ||||| || ||||| || ||||| ||||| |||| ||||| ||||| ||| Sbjct 310740 TGCTTCTATGGCTTCCAAATTGCCATGGAAAACATGCATTCTGAAATGTATAGTCTCCTT 310681 Query 25747 CTGATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCAC 25806 | | || ||||||| || | || || || || || ||| || || Sbjct 310680 ATCAACACTTACATTAACGATTCCAAAGAAAGGGAATTTCTCTTCAATGCAATTGAAACA 310621 Query 25807 ATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATC---AACAGCCAGAGC 25863 || || || | |||| |||||| |||||| || | ||||| |||| ||| Sbjct 310620 ATGCCTTGCGTAAAGAAGAAGGCAGACTGGGCCTTGCATTGGATTGGGAACAA--AGAA- 310564 Query 25864 GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGT 25923 | ||| | ||| || | | ||||||||||| || || || || ||||| || ||| Sbjct 310563 GTTACCTATGGAGAACATGTTGTAGCCTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGT 310504 Query 25924 TCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTC 25982 || ||||| ||||||||||||||||| | | | ||| ||||| || || ||||| Sbjct 310503 TCTTTTGCATCCATCTTCTGGCTCAAGAA-ATGAGGATTGATGCCTGGCCTCACATTTTC 310445 Query 25983 CAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 ||| || || || ||||| || |||||| | ||| | || ||||||||||| | | | Sbjct 310444 CAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTCATGTTTA- 310386 Query 26043 GGGCCACTTGCTCCACAAACCTTC 26066 ||| |||| ||||||||||| Sbjct 310385 --AACACCTGCTTCACAAACCTTC 310364 >seq262852 Length=263465 Score = 105 bits (116), Expect = 1e-17 Identities = 397/610 (65%), Gaps = 21/610 (3%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 |||| ||| ||||| | ||||| ||| || || ||||| || || ||| | ||| Sbjct 13586 GATACTTGGAAGATGCATAAGAAAGCTGAAGCTTCCTTTTGGACAGCTGAGGAGGTGGAT 13527 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || |||||||||| | |||| | || || || ||| ||||| | | Sbjct 13526 CTTTCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCGTGAGGAGAGATATTTTAT--AC 13469 Query 25594 TACGTGTTG--GCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTG-TGCGAG 25650 || |||| || |||| |||||| |||||| | ||| || || || || ||| || Sbjct 13468 CACATGTTCTAGCTTTCTGTGCAGCAAGTGATGGCAAAGTAAATGAAAACTTGGTGC-AG 13410 Query 25651 AGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGG 25708 |||| | | |||| ||| |||| || ||| || ||||| || ||||| || Sbjct 13409 TGATTTAGCCAAAAAGTTCAGATTACG--GAAGCCTGCTGCTTCTATGGCTTCCAAATTC 13352 Query 25709 CCATCGAAAATGTGCACTCTGAGGTGTAT-GCCAAGCTTCTGATGACGTACATTACAGAC 25767 |||| ||||| | || || || ||||| | | | ||| | || ||||||| ||| Sbjct 13351 CCATGGAAAACATACATTCGGAAATGTATAGTCTA-CTTATCGACACTTACATTAAAGAT 13293 Query 25768 GTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAG 25827 | || || || || || ||| || || ||||| | | |||| |||| Sbjct 13292 TCCAAAGAAAGGGAATTTCTCTTCAATGCAATTGAAACGATACCTTGTGTAAAGAAGAAG 13233 Query 25828 GCGCGGTGGGCCATGAAGTGGATC---AACAGCCAGAGCGCTACGTTTGGCGAGCGGCTG 25884 || |||||| || | ||||| |||| ||| ||||| | ||| || | | Sbjct 13232 GCAGATTGGGCCTTGCATTGGATTGGGAACAA--AGAA-GCTACCTATGGAGAATGTGTA 13176 Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 ||||||||||| || || || || ||||| || || || |||| ||||||||||| Sbjct 13175 GTAGCCTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGCTCTTTTGGATCCATCTTCTGG 13116 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 |||||| | | || || || || || ||| |||| || || || ||||| || Sbjct 13115 CTCAAGAAACAAGGACTGATACCTGGCCTCACATTTGCCAATGAACTTATTAGCAGAGAT 13056 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCT 26064 |||||| | ||| | || ||||||||||| | | || ||| |||| ||||||||| Sbjct 13055 GAGGGTTTACACTGCGACTTTGCCTGCCTCATATTCA---AACACCTGCTTCACAAACCT 12999 Query 26065 TCTCAAGAGA 26074 | |||||| Sbjct 12998 TTGGAAGAGA 12989 >seq260499 Length=1869696 Score = 96.9 bits (106), Expect = 6e-15 Identities = 153/216 (71%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 25864 GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGT 25923 ||||| | ||| || || | ||||||||||| || || || || ||||| || || Sbjct 725597 GCTACCTATGGAGAACGTGTTGTAGCCTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGC 725656 Query 25924 TCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGA-CCATGCCCGGGCTGTACTTTTC 25982 || ||||| | |||||||| |||||| | ||| ||| ||||| || || ||||| Sbjct 725657 TCTTTTGCATCGATCTTCTGTCTCAAG-AAAAGAGGATTGATGCCTGGCCTCACATTTTC 725715 Query 25983 CAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 ||| || | || ||||| || |||||| | ||| | | ||||||||||| | | || Sbjct 725716 CAATGAACCTATTAGCAGAGATGAGGGTTTACACTGCAACTTTGCCTGCCTCATGTTCA- 725774 Query 26043 GGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGT 26078 ||| |||| ||||||||||| || |||| || Sbjct 725775 --AACACCTGCTTCACAAACCTTCAGAACAGACAGT 725808 >seq48835 Length=336802 Score = 91.5 bits (100), Expect = 3e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 25865 CTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTT 25924 |||| ||||| || || |||| |||||||||||| | || || || |||||| || | Sbjct 232506 CTACTTTTGGGGAAAGGGTGGTGGCCTTTGCTGCTCTAGAAGGTATTTTTTTCTCAGGAT 232447 Query 25925 CGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCA 25984 | ||||| || || |||||| | ||| | | || ||||| || || ||||||| Sbjct 232446 CTTTTGCTGCTATATTCTGGTTAAAGAACAGAGGTCTTATGCCTGGACTCACTTTTTCCA 232387 Query 25985 ACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 || ||||||||||| || || || || ||| | || |||| |||||| Sbjct 232386 GTGAACTCATCAGCAGAGATGAAGGGCTTCACTGTGACTTTGTTTGCCTG 232337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 925720584072960