Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq251325 86.0 5e-12 seq260417 82.4 6e-11 >seq251325 Length=352111 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 28650 AAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT 28709 ||||| ||| | || |||||||||||||| |||||||| ||||| ||| |||||||| Sbjct 311208 AAAGAAGGAATTCCTCCTGATCAACAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGAT 311149 Query 28710 TCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGA 28769 ||| || | || || ||||||||||| || |||||||| || || || || ||| Sbjct 311148 GGATGTACTTTGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCATATTGTGTTGAGA 311089 >seq260417 Length=1194950 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| ||||| |||||||||||||| || ||| ||| ||| || Sbjct 431703 AATGCAGATCTTTGTGAAAACCTTAACGGGTAAAACTATCACCCTCGAGGTGGAGCCCAG 431762 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || ||||| || ||| ||||| || || | ||| || || Sbjct 431763 TGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCTGACCA 431822 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| | |||||||| || || || |||||||| || || |||| || || Sbjct 431823 GCAGAGATTGATCTTTGCCGGGAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 431882 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| || || || || || |||||| |||| Sbjct 431883 CATCCAGAAGGAGTCCACCCTGCACCTGGT 431912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424009701442836