Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq262256 358 8e-94 seq261757 358 8e-94 seq252022 205 1e-47 seq256662 140 4e-28 seq261124 113 5e-20 seq253925 89.7 6e-13 >seq262256 Length=1750713 Score = 358 bits (396), Expect = 8e-94 Identities = 683/995 (69%), Gaps = 21/995 (2%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| ||||| || |||| ||| ||||| || || ||| | ||| ||| || ||| Sbjct 1300013 TGTCTTAGATGCTCATCCAAACACTGGACAGCAAAGGGGTCTATGTCAGTGTCAAACTTA 1299954 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || || | |||||| | | || ||||||| || ||| || |||||| ||| Sbjct 1299953 TTGGCAAAGAAGTGGTGA---TGACGCAGCATCCAGTTCAAGTCACCCATCCCGAAAACG 1299897 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || ||||| |||| || || |||||||| || ||||| | || || || | ||| || Sbjct 1299896 CACACGGAGCGTACATGGACCCCGTTGCAGGGTGGGTAGGGGGCACCCTTGGACACATCG 1299837 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTA- 160285 ||||| |||| |||||||| |||||||| || | |||||||||||| || |||| || Sbjct 1299836 CCTTCAAAGTAGTGCCACTTGACAAACCTAGCCACCGCCTGCATGTCAGACATGTCATAC 1299777 Query 160286 TTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAG 160345 |||| | ||| || | || ||||| || | || || | || | |||||||| || Sbjct 1299776 TTTGGGC-TCAAGGACAGCGCGCCGGGGACTTCTGGGATCCTTTGAATAGTGGCCCAGAG 1299718 Query 160346 GTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTC 160405 | ||| || |||||||| ||||| || | |||||| || |||| | |||| || Sbjct 1299717 ATATTCATCTGGGCTGTATGTGTCTTTTGCCCATTCTATAAACTTTTGGATTTTTTCGTT 1299658 Query 160406 CCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATAT 160465 | ||| || | || ||| || | || ||||| || || ||||| || || || Sbjct 1299657 CTCCAGCACATATCCCACATAGTCCCTACTGACTACAAAATAGGCACTGCCTGAAAAAAT 1299598 Query 160466 CGGTATGGGTATAGGCGG-CGTGTCTTTGTCCTGA--CCGGTGTTAGACACCACTCCTTT 160522 ||| | | ||| || |||| ||||| ||| || ||||| | | | || || Sbjct 1299597 AGGTGTTTCAAGAGGAGGGCGTG-CTTTG--CTGGTCCCCGTGTTGGTGAGCTTCCCATT 1299541 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGG-CATGCGTTCCGTCT 160581 | | | | ||||| ||||||| || | |||| || || ||| || || | Sbjct 1299540 AATAACTTCATAACGCTTTTTCCACC-GATCCTCTTTATTGGAGGGCATCTTCTCAGTTT 1299482 Query 160582 CTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGA 160641 | || |||| | || ||||| || |||| | |||| || || ||||| || || | Sbjct 1299481 CCAGGTTGTTTTCGCCCATCAGCGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAA 1299422 Query 160642 GCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCA 160701 ||||| || |||| || | || |||| ||| ||||| | || |||||| || || Sbjct 1299421 TAGGAAAATCCATACCACAAAGATTGATCAAGTATTTCCAGTCTGCACTCAGGCTGTACA 1299362 Query 160702 GGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCT 160761 ||||| ||||||| || | || ||||| || |||||||| ||||| || || ||| ||| Sbjct 1299361 GGTCCTTCATGCAGTTGAGGTCCGCCTGAACCCGGCTCCACGAAGCATAAACCACGCTCT 1299302 Query 160762 CTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCC---- 160817 | || | |||||||| ||||||||| |||||| || | || |||| |||||| Sbjct 1299301 CCAGCTGACTGGCCAAGAAGACGTTACTGAAACAGGATGCAATGCCCATCACCGCTGCTA 1299242 Query 160818 AGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCG 160877 | || |||| | || | ||| |||||| || | |||||| | ||||||||| Sbjct 1299241 AAAAGGAAC----TGTCTGATTTTTTGTCCACATGAATGCAATAGAAATTCTGAGGCATA 1299186 Query 160878 TAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAG 160937 ||||||||||| || | ||| || | ||| || || || ||||| | ||| |||||||| Sbjct 1299185 TAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAGTAT 1299126 Query 160938 GCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTG 160997 || || || ||||| | ||| || | || ||||| || | || || ||| | ||| Sbjct 1299125 GCAATTGGGAACTCCGCCTCTTCTCTGCTAAGGGATTCGACAATATATTTGCGCCTTTTG 1299066 Query 160998 ATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 || ||| || ||||||| | |||||||| ||||| Sbjct 1299065 ATGAAAGAAGCACAATCGCTGGTCATGTTTATATA 1299031 >seq261757 Length=618156 Score = 358 bits (396), Expect = 8e-94 Identities = 683/995 (69%), Gaps = 21/995 (2%) Strand=Plus/Plus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| ||||| || |||| ||| ||||| || || ||| | ||| ||| || ||| Sbjct 5995 TGTCTTAGATGCTCATCCAAACACTGGACAGCAAAGGGGTCTATGTCAGTGTCAAACTTA 6054 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || || | |||||| | | || ||||||| || ||| || |||||| ||| Sbjct 6055 TTGGCAAAGAAGTGGTGA---TGACGCAGCATCCAGTTCAAGTCACCCATCCCGAAAACG 6111 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || ||||| |||| || || |||||||| || ||||| | || || || | ||| || Sbjct 6112 CACACGGAGCGTACATGGACCCCGTTGCAGGGTGGGTAGGGGGCACCCTTGGACACATCG 6171 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTA- 160285 ||||| |||| |||||||| |||||||| || | |||||||||||| || |||| || Sbjct 6172 CCTTCAAAGTAGTGCCACTTGACAAACCTAGCCACCGCCTGCATGTCAGACATGTCATAC 6231 Query 160286 TTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAG 160345 |||| | ||| || | || ||||| || | || || | || | |||||||| || Sbjct 6232 TTTGGGC-TCAAGGACAGCGCGCCGGGGACTTCTGGGATCCTTTGAATAGTGGCCCAGAG 6290 Query 160346 GTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTC 160405 | ||| || |||||||| ||||| || | |||||| || |||| | |||| || Sbjct 6291 ATATTCATCTGGGCTGTATGTGTCTTTTGCCCATTCTATAAACTTTTGGATTTTTTCGTT 6350 Query 160406 CCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATAT 160465 | ||| || | || ||| || | || ||||| || || ||||| || || || Sbjct 6351 CTCCAGCACATATCCCACATAGTCCCTACTGACTACAAAATAGGCACTGCCTGAAAAAAT 6410 Query 160466 CGGTATGGGTATAGGCGG-CGTGTCTTTGTCCTGA--CCGGTGTTAGACACCACTCCTTT 160522 ||| | | ||| || |||| ||||| ||| || ||||| | | | || || Sbjct 6411 AGGTGTTTCAAGAGGAGGGCGTG-CTTTG--CTGGTCCCCGTGTTGGTGAGCTTCCCATT 6467 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGG-CATGCGTTCCGTCT 160581 | | | | ||||| ||||||| || | |||| || || ||| || || | Sbjct 6468 AATAACTTCATAACGCTTTTTCCACC-GATCCTCTTTATTGGAGGGCATCTTCTCAGTTT 6526 Query 160582 CTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGA 160641 | || |||| | || ||||| || |||| | |||| || || ||||| || || | Sbjct 6527 CCAGGTTGTTTTCGCCCATCAGCGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAA 6586 Query 160642 GCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCA 160701 ||||| || |||| || | || |||| ||| ||||| | || |||||| || || Sbjct 6587 TAGGAAAATCCATACCACAAAGATTGATCAAGTATTTCCAGTCTGCACTCAGGCTGTACA 6646 Query 160702 GGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCT 160761 ||||| ||||||| || | || ||||| || |||||||| ||||| || || ||| ||| Sbjct 6647 GGTCCTTCATGCAGTTGAGGTCCGCCTGAACCCGGCTCCACGAAGCATAAACCACGCTCT 6706 Query 160762 CTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCC---- 160817 | || | |||||||| ||||||||| |||||| || | || |||| |||||| Sbjct 6707 CCAGCTGACTGGCCAAGAAGACGTTACTGAAACAGGATGCAATGCCCATCACCGCTGCTA 6766 Query 160818 AGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCG 160877 | || |||| | || | ||| |||||| || | |||||| | ||||||||| Sbjct 6767 AAAAGGAAC----TGTCTGATTTTTTGTCCACATGAATGCAATAGAAATTCTGAGGCATA 6822 Query 160878 TAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAG 160937 ||||||||||| || | ||| || | ||| || || || ||||| | ||| |||||||| Sbjct 6823 TAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAGTAT 6882 Query 160938 GCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTG 160997 || || || ||||| | ||| || | || ||||| || | || || ||| | ||| Sbjct 6883 GCAATTGGGAACTCCGCCTCTTCTCTGCTAAGGGATTCGACAATATATTTGCGCCTTTTG 6942 Query 160998 ATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 || ||| || ||||||| | |||||||| ||||| Sbjct 6943 ATGAAAGAAGCACAATCGCTGGTCATGTTTATATA 6977 >seq252022 Length=444942 Score = 205 bits (226), Expect = 1e-47 Identities = 244/330 (74%), Gaps = 1/330 (0%) Strand=Plus/Plus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || ||||| | ||| | | ||| || |||| || || || || ||||| ||||||||| Sbjct 235455 TAGAGAGTGAGGCAGGCTGTTCTCGAGATCTGCCCGGAACCAAAGGTGTTAAAGAGGCAC 235514 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 || | ||||| |||||||||| |||||||||||| || || | || |||| ||||| Sbjct 235515 TTGTAACAGCCCTCGTCCTCCAGGGTGGTATTCCAGAAGGTGATGGTGGAGTCCCGGAGT 235574 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| ||| || |||||||| || || || | ||| || || || || || |||| | Sbjct 235575 CCCAGCTGGGTGATGTTCACCTTGTCCTTGTAGGAAGGCTGGACCACGACCCCATGGTCC 235634 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 |||||||||| |||||||||||||||| || ||||| || |||||||| || || ||| Sbjct 235635 CAGCTGAAGGTGACCATGTTCTCCGGGCTCGTAGCCTTGATTTTCTGCCATGTAACAATC 235694 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 || || || | || ||||| || ||| | | ||||| || |||| |||||| || Sbjct 235695 AGGACTTCCTGGGAAGTTTGCAGAGAGCATTTTAAGGAAGCAGGTGTGTGCAGCAGCACT 235754 Query 168450 CGCTCATCTTGAGTTACGACCTGTCCCTGT 168479 ||||| || || || | |||||||||| Sbjct 235755 TTTTCATCCTGGGTCACCA-CTGTCCCTGT 235783 Score = 120 bits (132), Expect = 3e-22 Identities = 151/207 (73%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 167898 GTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTT 167957 || |||| |||| || || |||||||| |||||||| || || ||||||||||| Sbjct 232976 GTCACAGACCCCAGGTGCAGCACCTTGCAGATCACCTCC---TTCCCCACTTGACTCTTG 233032 Query 167958 GGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTT 168017 || ||||| || || | ||||| || || || || ||||| | ||| | | | Sbjct 233033 GGGTCTTTGACCTGGAGGATGCTGGTGACGGAAGTGGTCCCATTAGGGTGTGAGAGACTC 233092 Query 168018 TTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGT 168077 | ||| ||||||||||||||||| || || || ||||| | || ||||| || || || Sbjct 233093 TCCGTACTGTTCTCAATCCCTGACCCAGCTACTTTCCAAGAGATCACAGGGGCTGGGCGG 233152 Query 168078 GCTGTAGCAGAGCAGGTAATATTTAAG 168104 || || |||||||| || ||||||||| Sbjct 233153 GCAGTGGCAGAGCAAGTGATATTTAAG 233179 >seq256662 Length=553297 Score = 140 bits (154), Expect = 4e-28 Identities = 244/355 (69%), Gaps = 0/355 (0%) Strand=Plus/Minus Query 160678 TCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGC 160737 |||| | || |||||| || |||||| ||||||| || | |||||||| || |||| Sbjct 195053 TCCAGTCTGCACTCAGGCTGTACAGGTCTTTCATGCAGTTGAGGTCTGCCTGAACCCGGC 194994 Query 160738 TCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACG 160797 |||| ||||| || || | | |||| | | |||| |||||||||||| | |||||| | Sbjct 194993 TCCACGAAGCATAAACCAAGCTCTCCAACTGACTGTCCACAAAGACGTCACTGAAACAGG 194934 Query 160798 ACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGC 160857 | || |||| | | || || || || || | ||| |||||| || | || Sbjct 194933 GTGCAATGCCCATCGCTGCTGCTAAAAAGGAATTGTCTGATTTTTTGTCCACATGAATGC 194874 Query 160858 AATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTAT 160917 ||| | || |||||| ||||||||||| || | ||| || | ||| || || || | Sbjct 194873 AATGGAAATTTTGAGGCATCTAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGT 194814 Query 160918 GATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGG 160977 |||| | ||| ||||||| || || || ||||| | ||| || | || ||||| | Sbjct 194813 GATGAACCACTGTAGAGTATGCAATTGGGAACTCCGCCTCTTCTCTGCTAAGGGATTCTA 194754 Query 160978 TCAGGTACTTTCGCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 | | || ||| ||||||| ||| || |||| | |||||||| ||||| Sbjct 194753 CAATATCTTTGCGCCTCTTGATGAAAGAAGCACAGCTGCTGGTCATGTTTATATA 194699 >seq261124 Length=598840 Score = 113 bits (124), Expect = 5e-20 Identities = 243/359 (68%), Gaps = 7/359 (2%) Strand=Plus/Minus Query 160605 GATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAG 160664 || || |||| | |||| || || | ||| || || | ||||| | |||| || | Sbjct 106908 GACTTGAGCTTCCTGACAATTTCCATGTTGGTTTTAATAGGAAAAACCATACCACAAAGA 106849 Query 160665 TTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCT 160724 | |||| | ||||||| | || |||| || || ||| | ||||| || | |||| Sbjct 106848 CTGATCAGGCACTTCCAGTCTGCATTCAGCCTGTAGAGATCCTTTATGCAGTTGAGATCT 106789 Query 160725 GCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACG 160784 ||||| || | ||||| ||||| || || | | |||| || | ||||||| ||||||| Sbjct 106788 GCCTGAACCTGACTCCATGAAGCATAAACCATGCTCTCCAGCTGACTGGCCGCAAAGAC- 106730 Query 160785 TTATCGAAACACGACACGATTCCCACCA---CCGCCAGAAAGAACATCTTATCCGCCTTT 160841 ||| || || || || || ||||| | || | |||||| || | | ||| Sbjct 106729 TTACTGACACTGGATACCATGCCCACTGATGCAGCTAAAAAGAA-ATTGTCTGGTTTTTT 106671 Query 160842 CGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCG 160901 |||||| || | |||||| | || ||| || ||||||||||| || | |||||| Sbjct 106670 TTGTCCACATGAAGGCAATAGAAATTTTGAAGCCTATAGATGGCCCTCAGGAGCCTCTCA 106611 Query 160902 AACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 | || || || || | ||| ||||| || |||| || || ||||||| | ||| || Sbjct 106610 AGTATTTCAATTTTGTCATGAATCAC--TATAGTATGCAATTAGAAACTCCGCCTCTTC 106554 >seq253925 Length=277183 Score = 89.7 bits (98), Expect = 6e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 176211 TTGTTTGTATCTAGTATATGTAGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTA 176270 |||||| |||| | | | ||||| ||| ||| |||| || |||| |||||| | Sbjct 143980 TTGTTTTTATCAACTTCCTTCAGATACTTTGCTAACTCACTGGGAGAGTTATAATCTTCC 143921 Query 176271 ACATGTATAAATGCGTGTGGTGGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAA 176330 ||||| ||||||| | || |||||| || || ||||| |||| || || || || | Sbjct 143920 ACATGAATAAATGAATCTGCTGGAATATAATTCTCATAGTTTTCCCTAGATGGCCCCAGC 143861 Query 176331 ACTATTGGTACGGTACGTGCTAATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTG 176390 || | ||||| | | || | || | |||| |||||| | |||||| || || Sbjct 143860 ACAACAGGTACAGAGCCAGCCAGAAAAGCATTATAGAGCTTTTCAGTGATGTAATCTTTG 143801 Query 176391 TGAATTGAGTTTTCAAAAGCTAAATAGAACTTACATG 176427 || |||||||||||||| | | ||| || || |||| Sbjct 143800 TGGATTGAGTTTTCAAAGGAAAGATAAAATTTGCATG 143764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575277694359840