Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq237447 127 4e-24 seq249408 122 2e-22 seq78631 122 2e-22 seq251325 113 8e-20 seq243700 111 3e-19 seq261730 107 3e-18 seq260417 105 1e-17 seq259988 100 5e-16 seq43725 84.2 4e-11 >seq237447 Length=29837 Score = 127 bits (140), Expect = 4e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || ||| || ||||||||||| || | ||| || Sbjct 13440 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGATAAAGTACGTCCATCTTCC 13381 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| ||||| ||||| || | |||||| ||||||||| | |||||||| ||||| || Sbjct 13380 AGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGATGAATTCCTTCCTTATCCTGG 13321 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| ||| | |||| | ||| | || | ||||| || ||||| || || || Sbjct 13320 ATCTTGGCTTTCACATTTTCTGTTGTACCCGAGGGTTCAACCTCAAGAGTGATGGTCTTT 13261 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTTATT 193366 ||||| || ||||||||||| || ||||| || || Sbjct 13260 CCTGTCAGGGTTTTTACAAAAATCTGCATCTTTTT 13226 >seq249408 Length=399222 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || ||| || ||||| || || || | ||| || Sbjct 143627 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 143686 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | |||||| ||||||||||| |||||||| ||||| || Sbjct 143687 AGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 143746 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| ||| | |||| || ||||| || | ||||| || ||||| || || || Sbjct 143747 ATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGTCTTT 143806 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || |||||||| || || |||||||| Sbjct 143807 CCCGTCAGGGTTTTTACGAAAATCTGCATTTT 143838 >seq78631 Length=346750 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || ||| || ||||| || || || | ||| || Sbjct 179204 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 179263 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | |||||| ||||||||||| |||||||| ||||| || Sbjct 179264 AGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 179323 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| ||| | |||| || ||||| || | ||||| || ||||| || ||||| Sbjct 179324 ATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGTTTTT 179383 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || |||||||| || || ||||| || Sbjct 179384 CCCGTCAGGGTTTTTACGAAAATCTGCATCTT 179415 >seq251325 Length=352111 Score = 113 bits (124), Expect = 8e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 193164 GTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCG 193223 |||| ||| || ||| || ||||| || || || | ||| || | ||| || || Sbjct 311108 GTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCA 311167 Query 193224 GCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTT 193283 ||||| || | |||||||||||||||||| ||||||||||||| | || |||| |||| Sbjct 311168 GCAAAGATCAGTCTCTGTTGATCAGGAGGAATTCCTTCTTTATTCCGGATCTTGGCTTTT 311227 Query 193284 ATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTT 193343 | |||| || ||||| || || ||||| || ||||| || || || || | | ||| Sbjct 311228 ACATTTTCTATTGTATCTGAGGATTCAACCTCAAGAGTGATGGTCTTTCCCATCGGAGTT 311287 Query 193344 TTTACAAATATTTGCATTTT 193363 |||| || || ||||| || Sbjct 311288 TTTATGAAAATCTGCATCTT 311307 >seq243700 Length=14829 Score = 111 bits (122), Expect = 3e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || ||||| | || || || ||| || | |||||| || ||||| || | ||| Sbjct 8853 AATGTTGTAGTCACACAAAGTACTTCCATCTTCCAGTTGTTTGCCAGCAAAGATCAGTCT 8794 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| ||||||||||| |||||||| ||||| || || |||| ||| | |||| || || Sbjct 8793 CTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTATTGT 8734 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || | ||||| || ||||| || | | || || || |||||||| || || || Sbjct 8733 ATCCGAGGGTTCAACCTCAAGAGTCATGATCTGTCCCGTCAGGGTTTTTACGAAAATCTG 8674 Query 193358 CATTTT 193363 ||| || Sbjct 8673 CATCTT 8668 >seq261730 Length=739691 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || ||| || ||||| || || || | || || Sbjct 78735 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCGTCTTCC 78676 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | |||||| ||||||||||| ||| |||| ||||| ||| Sbjct 78675 AGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTGCTTCCTTATCCTGT 78616 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| ||| | |||| || ||||| || | ||||| || ||||| || || || Sbjct 78615 ATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGATCAACCTCAAGAGTGATGGTCTTT 78556 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || |||||||| || || || || || Sbjct 78555 CCCGTCAGGGTTTTTACGAAAATCTGTATCTT 78524 >seq260417 Length=1194950 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| | || || ||||| |||| || | ||| || || || |||||| Sbjct 431933 ATTCCCCCTCTAAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 431874 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || |||||||| || |||||||| || ||||| Sbjct 431873 GACAGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGG 431814 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || |||| || | ||| ||| || || | ||| Sbjct 431813 GGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 431754 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || ||||||||||| |||| ||||| ||||| || |||||| Sbjct 431753 ACCTCGAGGGTGATAGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCATT 431703 >seq259988 Length=219189 Score = 100 bits (110), Expect = 5e-16 Identities = 119/159 (75%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| ||||| ||||| || | |||||| ||||||||||| |||||||| | Sbjct 215935 ATCTTCCAGTTGCTTTCCAGCAAAGATCA-TCTCTGCTGATCAGGAGGAATTCCTTCCTA 215877 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| ||| | |||| || ||||| || | ||||| || |||| || Sbjct 215876 ATCCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAG--AT 215819 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| | ||||||| || || ||||| || Sbjct 215818 TGTTTTCCCTGTCGGGGTTTTTATGAAAATCTGCATCTT 215780 >seq43725 Length=1898 Score = 84.2 bits (92), Expect = 4e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || ||||| |||| || | ||| || || || ||||| || | || | | Sbjct 1336 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 1277 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || ||||| || |||||||| || ||||| || || || || || Sbjct 1276 TCTTCCAGCTGCTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 1217 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| || | ||| | | || || | ||| || || || || ||| Sbjct 1216 TCTTGGATCTTGGCCTTGACATTCTCAGTGGTGTCACTGGGCTCCACCTCAAGGGTGATA 1157 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||||||| |||| ||||| ||||| || |||||| Sbjct 1156 GTTTTACCCGTTAAGGTTTTCACAAAGATCTGCATT 1121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896628367442880