Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq257400 143 4e-29 seq262852 132 7e-26 seq253961 123 4e-23 seq250257 123 4e-23 seq254358 84.2 3e-11 >seq257400 Length=867372 Score = 143 bits (158), Expect = 4e-29 Identities = 555/867 (64%), Gaps = 11/867 (1%) Strand=Plus/Plus Query 17870 TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATA 17929 || || || ||| | ||||| ||||| |||||||| ||||||| || || | |||| Sbjct 653844 TACTCGCCTACTCTCTTCTCAAAGAAGTTTGTCTTCCCTTCCAGCGAAATATTCTCCATA 653903 Query 17930 AAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAATAA-TCT 17988 || ||||| ||||| | | || | || || | | | | |||| ||| Sbjct 653904 AAGTCAAAGGGATTCTCCACTCTGAAA-ACCTTGCTGAAACCCAGTTCCAGCATAAGTCT 653962 Query 17989 ATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAA 18048 ||||| || ||||| | || || ||| ||| ||||||||| || | || ||| Sbjct 653963 GTCTGCCACGAATTCAATGTACTGCTTCATTAAAGTGCAATTCATTCCAATCAGCTTGAC 654022 Query 18049 AGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTAT 18108 ||| | || || ||| || || | |||||| ||||| | | ||||| | | | Sbjct 654023 AGGCAAGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACAGCATTGATAATTATTTCTTT 654082 Query 18109 TACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAATC 18168 ||| || || | ||| | || | ||| || || || | || ||||| || Sbjct 654083 TACTCTCTGTTCCGAAGGTTTGTGAAGCAGGTGTTTG-AACATGAGG--CAGGCAAAGTC 654139 Query 18169 AGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTAT 18228 | ||||||||| ||||||||| || | ||| || ||| || | || ||||| | Sbjct 654140 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAA 654199 Query 18229 ACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAAC 18288 |||| ||| || ||||| || || ||||| ||| | ||||||||| || || || || Sbjct 654200 TCCTCGTTTCTTAAGCCAGAAGATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTAC 654259 Query 18289 GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATCCATTTTTG 18348 || || |||| | | ||| || | | || ||| | ||||| Sbjct 654260 TGCTGCAAAAGCTACGACACGTTCTCCATAGGTAGCTTCTTTGTCCCCAATCCAACGCAA 654319 Query 18349 TGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATC 18408 ||||| ||| | | | || || || | || || ||||| || | | || Sbjct 654320 GGCCCAGTCTGCCTTCTTCTTTACGCAAGGCATCGTTTCAATTGCATTGAAGAGAAATTC 654379 Query 18409 TTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTAT 18468 |||||||||||||||| || ||||||||||| | | | ||||||||| |||||||| Sbjct 654380 CCTTTCTTTGGAATCTTTAATGTAAGTGTCGATAAGGAGACTATACATTTCGGAATGTAT 654439 Query 18469 GCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAA--TC-TC 18525 | ||||||| || || || || | ||| || | | || || | | |||| || | Sbjct 654440 GTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTG 654499 Query 18526 GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGC 18585 ||| ||||| || ||||| || ||||| ||||| || ||| | ||| || || || Sbjct 654500 GCT---AAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGC 654556 Query 18586 CAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATC 18645 | ||||| | || |||| | | || | | ||| || | ||| | | || || Sbjct 654557 TAGAACATGTGATATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTC 654616 Query 18646 TTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTTT 18705 || || ||||| || || || | ||||||||| || | || || | || ||||| | Sbjct 654617 CTTGGAAAGATCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTG 654676 Query 18706 ATAAATATCTTCATGTTGTATAGGAAA 18732 ||||||| | | || |||||||| Sbjct 654677 CCAAATATCATGGTATTCGATAGGAAA 654703 >seq262852 Length=263465 Score = 132 bits (146), Expect = 7e-26 Identities = 554/869 (64%), Gaps = 15/869 (2%) Strand=Plus/Plus Query 17870 TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATA 17929 || || || ||| | ||||| |||||||| ||||| ||||||| ||| ||| | |||| Sbjct 12745 TACTCGCCTACTCTCTTCTCAAAGAAATTGGTCTTCCCTTCCAGTGAAATTTTCTCCATA 12804 Query 17930 AAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAATAA-TCT 17988 || ||||| ||||| | | || | || || | | | | |||| ||| Sbjct 12805 AAGTCAAAGGGATTCTCCACTCTGAAA-ACCTTGCTGAAACCCAGTTCCAGCATAAGTCT 12863 Query 17989 ATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAA 18048 ||||| | | ||| | || || ||| ||| |||||||| || | || ||| Sbjct 12864 GTCTGCCATGAGTTCAATGTACTGCTTCATTAAAGTACAATTCATTCCAATCAGCTTGAC 12923 Query 18049 AGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTAT 18108 ||| | || || ||| || || | |||||| |||||| | | ||||| | | | Sbjct 12924 AGGCAAGGCCTCTGTAAGGAACTCCTGTTCTATCCTAACAGATTTGATAATTATTTCTTT 12983 Query 18109 TACCCTAGATTTTGGCAA--TTTATTAATTATGTGATTATAATATAATAAACACGCAAAA 18166 ||| || | || || ||| | || | ||| || ||||| | || ||||| Sbjct 12984 TACTCTC--TCTTCCAAAGGTTTGTGAAGCAGGTGTTTG-AATATGAGG--CAGGCAAAG 13038 Query 18167 TCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATT 18226 || ||||||||| ||||||||| || | ||| || ||| || | || || || Sbjct 13039 TCGCAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGCAAATGTGAGGCCAGGTATC 13098 Query 18227 ATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCA 18286 | ||| ||| || ||||| || || ||| | ||| | ||||||||| || || || Sbjct 13099 AGTCCTTGTTTCTTGAGCCAGAAGATGGATCCAAAAGAGCCAGAAAAGAAGATTCCTTCT 13158 Query 18287 ACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATCCATTTT 18346 || || || |||| || | ||| || | | || ||| || ||||| | Sbjct 13159 ACTGCTGCAAAGGCTACTACACATTCTCCATAGGTAGCTTCTTTGTTCCCAATCCAATGC 13218 Query 18347 TGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCA 18406 ||||| ||| | | | ||| ||||| | || || ||||| || | | Sbjct 13219 AAGGCCCAATCTGCCTTCTTCTTTACACAAGGTATCGTTTCAATTGCATTGAAGAGAAAT 13278 Query 18407 TCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGT 18466 || |||||||||||||||| || ||||||||||| | | | ||||||||| |||||| Sbjct 13279 TCCCTTTCTTTGGAATCTTTAATGTAAGTGTCGATAAGTAGACTATACATTTCCGAATGT 13338 Query 18467 ATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAA---TC 18523 ||| ||||||| | || || || | ||| || | | || || | | |||| | Sbjct 13339 ATGTTTTCCATGGGAATTTGGAAGCCATAGAAGCAGCAGGCTTCCGTAATCTGAACTTTT 13398 Query 18524 TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAAT 18583 | ||| ||||| | ||||| || ||||| ||| | || ||| | ||| | || Sbjct 13399 TGGCT---AAATCACTGCACCAAGTTTTCATTTACTTTGCCATCACTTGCTGCACAGAAA 13455 Query 18584 GCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATA 18643 || | ||||| | || |||| | | || | | ||| || | ||| | | || Sbjct 13456 GCTAGAACATGTGGTATAAAATATCTCTCCTCACGCTTCAGGGCTTCCCAGTGCTGAATG 13515 Query 18644 TCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATT 18703 || || || ||||| || || || | ||||||||| || | ||| || | || | ||| Sbjct 13516 TCCTTGGAAAGATCCACCTCCTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATGCATC 13575 Query 18704 TTATAAATATCTTCATGTTGTATAGGAAA 18732 || || |||| | | || |||||||| Sbjct 13576 TTCCAAGTATCGTGGTATTTGATAGGAAA 13604 >seq253961 Length=405542 Score = 123 bits (136), Expect = 4e-23 Identities = 375/578 (65%), Gaps = 7/578 (1%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||| ||| ||||||||| ||||||||| || | ||| || ||| || | Sbjct 310397 CAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 310456 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | |||| ||| || ||||| || || ||||| ||| || ||||||||| Sbjct 310457 CCAGGCATCAATCCTCATTTCTTGAGCCAGAAGATGGATGCAAAAGAACCAGAAAAGAAG 310516 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT 18337 || || || || || || |||| | ||| || | | || ||| || Sbjct 310517 ATTCCTTCTACTGCTGCAAAGGCTACAACATGTTCTCCATAGGTAACTTCTTTGTTCCCA 310576 Query 18338 ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTA 18397 ||||| | ||||| ||| | | | || || || | || || ||||| Sbjct 310577 ATCCAATGCAAGGCCCAGTCTGCCTTCTTCTTTACGCAAGGCATTGTTTCAATTGCATTG 310636 Query 18398 AACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATT 18457 || | | || ||||||||||||| || || ||||||| ||| | | | ||||||| Sbjct 310637 AAGAGAAATTCCCTTTCTTTGGAATCGTTAATGTAAGTGTTGATAAGGAGACTATACATT 310696 Query 18458 TCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATAT 18517 |||||||| ||| ||||||| || || || || | ||| || | | || || | | Sbjct 310697 TCAGAATGCATGTTTTCCATGGCAATTTGGAAGCCATAGAAGCAGCAGGCTTCCGTAATC 310756 Query 18518 TGAA--TC-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 |||| || | ||| |||| || ||||| || | ||| ||||| || ||| | | Sbjct 310757 TGAACTTCTTGGCT---AAATAGCTCCACCAAGTTTTGATTTACTATGCCATCACTTGCT 310813 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCAT 18634 || || | || | ||||| | || |||| | | || | | ||| | | | || Sbjct 310814 GCAAAGACAGCTAGAACATGTGATATAAAATCTCTCTCCTCAGGCTTCGGGCT-TCACAG 310872 Query 18635 TCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGT 18694 | | || || || || ||||| || || || | ||||||||| || || || || | Sbjct 310873 TGCTGAATGTCCTTGGAAAGATCCACCTCCTCAGCTGTCCAAAAGGAAGACTCAGCTTTC 310932 Query 18695 TTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 || ||||| | ||||||| | | || ||||||||| Sbjct 310933 TTATACATCTGCCAAATATCATGGTATTTTATAGGAAA 310970 >seq250257 Length=281617 Score = 123 bits (136), Expect = 4e-23 Identities = 366/564 (65%), Gaps = 5/564 (1%) Strand=Plus/Plus Query 18172 GTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACC 18231 ||||||||||||||||||| || | ||| || ||| || | || ||||| | || Sbjct 103455 GTGTAAACCTTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCC 103514 Query 18232 TCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCA 18291 || ||| || ||||| || || ||||| ||| ||||||||| || || || || Sbjct 103515 TCATTTCTTGAGCCAGAAGATGGATGCAAAAGAGTCAGAAAAGAAGATTCCTTCTACTGC 103574 Query 18292 CGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATCCATTTTTGTGC 18351 || || ||||| | | ||| || | | || ||| | ||||| || Sbjct 103575 TGCAAAGGCTATGACACATTCTCCATAGGTAGCTTCTTTGTCCCCAATCCAACGCAAGGC 103634 Query 18352 CCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT--AAACAAATCATCT 18409 ||| ||| | | | || || | || || ||||| ||| |||| || Sbjct 103635 CCAGTCTGCCTTCTTCTTTACGCAAAACATCATTTCAATTGCATTGAAAAGAAAT--TCC 103692 Query 18410 TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATG 18469 |||||||||||||||| || |||||||| || | | | ||||||||||||||||||| Sbjct 103693 CTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATG 103752 Query 18470 CTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTA 18529 ||||||| || || || || | ||| || | | || || | | |||| || | Sbjct 103753 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGA 103812 Query 18530 TAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAA 18589 ||||| || ||||| || ||||| ||||| || ||| | | ||| || || || | | Sbjct 103813 CTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCATCTGCTGCAAAGAAAGCTAGA 103872 Query 18590 ACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTTT 18649 |||| | || |||| | | || | | ||| || | ||| | | || || || Sbjct 103873 ACATGTGATATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTG 103932 Query 18650 GATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGT-TTGTACATTTTATA 18708 || ||||| || || || | ||||||| || | || || | | || ||||||| | Sbjct 103933 GAAAGATCCACCTCCTCAACTATCCAAAAGGAAGCCTCCGCTTTTCTTATACATTTGCCA 103992 Query 18709 AATATCTTCATGTTGTATAGGAAA 18732 ||||| | | || |||||||| Sbjct 103993 GATATCATGGTATTCAATAGGAAA 104016 >seq254358 Length=18439 Score = 84.2 bits (92), Expect = 3e-11 Identities = 174/256 (68%), Gaps = 6/256 (2%) Strand=Plus/Plus Query 18414 CTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTT 18473 ||||||||| ||| || ||||| || || | | | ||||||||||||||||||| ||| Sbjct 12759 CTTTGGAATTTTTAATGTAAGTATCAATAAGGAGATTATACATTTCAGAATGTATGTTTT 12818 Query 18474 CCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAA--TC-TCGCTAT 18530 |||| || || || || | ||| | | | || || | | |||| || | ||| Sbjct 12819 CCATGGCAATTTGGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAACTTCTTGGCT-- 12876 Query 18531 AAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAA 18590 ||||| | | ||||| || ||||| ||||| || ||| | | | || || |||| || Sbjct 12877 -AAATCATGCCACCAAGTTTTCATTCACTATGCCATCACTTGCTACAAAGAAAGCCAGAA 12935 Query 18591 CATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTTTG 18650 ||||| || |||| ||| || | | ||| || | ||| | | || || || | Sbjct 12936 CATATGATATAAAATATTTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGG 12995 Query 18651 ATAGATCAACTTCTTC 18666 | ||||| ||||| || Sbjct 12996 AAAGATCCACTTCCTC 13011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729410311934400