Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq251325 136 7e-27 seq249408 136 7e-27 seq250257 105 1e-17 >seq251325 Length=352111 Score = 136 bits (150), Expect = 7e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| ||||| || || | ||| | ||||| ||| || ||| || Sbjct 311068 TTTCTTAGCACCACCATGAAGTCTCAACACAATATGAAGAGTAGACTCCTTTTGAATGTT 311127 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| | | | || |||| ||| || |||||||| || | ||||||||| Sbjct 311128 GTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTG 311187 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || ||||||||||||| | || || ||||||||| ||| |||||||| Sbjct 311188 ATCAGGAGGAATTCCTTCTTTATTCCGGATCTTGGCTTTTACATTTTCTATTGTATCTGA 311247 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| || || ||||| ||||| || || | ||||| ||||| |||||||| || Sbjct 311248 GGATTCAACCTCAAGAGTGATGGTCTTTCCCATCGGAGTTTTTATGAAAATCTGCATCTT 311307 >seq249408 Length=399222 Score = 136 bits (150), Expect = 7e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||| | ||| || ||| || Sbjct 143599 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTT 143658 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | |||||| || Sbjct 143659 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTG 143718 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || ||| ||||| ||| ||||| || Sbjct 143719 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGA 143778 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || ||||| ||||| || || || | ||||| | ||| ||||||||||| Sbjct 143779 GGGTTCAACCTCAAGAGTGATGGTCTTTCCCGTCAGGGTTTTTACGAAAATCTGCATTTT 143838 >seq250257 Length=281617 Score = 105 bits (116), Expect = 1e-17 Identities = 194/283 (69%), Gaps = 1/283 (0%) Strand=Plus/Plus Query 39419 ATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTC 39478 ||||||||||||||||| |||||| || ||||| || ||| || | ||||| Sbjct 103734 ATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTC 103793 Query 39479 TGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGA 39538 || | ||||||||| | ||||| || || || || ||| ||| || |||||| Sbjct 103794 TGTAATCTGAACTTCTTGACTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCATC 103853 Query 39539 TGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTC 39598 |||||| ||||| |||| ||||| | ||||||| | | || | | || | ||| Sbjct 103854 TGCTGCAAAGAAAGCTAGAACATGTGATATAAAATATCTCTCCTCAGGCTTCAGGGCTTC 103913 Query 39599 CCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATG-CTACGG 39657 ||| | || || || || | ||| || || || | | ||||||| || | || || Sbjct 103914 CCAGTGCTGAATGTCCTTGGAAAGATCCACCTCCTCAACTATCCAAAAGGAAGCCTCCGC 103973 Query 39658 ATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAA 39700 ||| ||||||||||| | |||||| | |||||| ||||| Sbjct 103974 TTTTCTTATACATTTGCCAGATATCATGGTATTCAATAGGAAA 104016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902091529807200