Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq257400 129 2e-24 seq261822 109 2e-18 seq256484 98.7 3e-15 seq253079 98.7 3e-15 seq125322 98.7 3e-15 seq262852 96.9 1e-14 seq250257 96.9 1e-14 seq254358 93.3 1e-13 seq166132 84.2 6e-11 >seq257400 Length=867372 Score = 129 bits (142), Expect = 2e-24 Identities = 375/568 (66%), Gaps = 12/568 (2%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || || || || | || | || ||||||||||||||||| ||| | | | Sbjct 654712 TTTGTCATCTTTCCTATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCT 654653 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACC--CAGCCCACTGGGAAGCCC 133193 | |||||||| | || || ||| | ||||| ||| |||| |||||||||||| Sbjct 654652 TCCTTTTGGACAGCTGAGGAGGTGGATCTTTCCAAGGACATTCAGC--ACTGGGAAGCCC 654595 Query 133194 TTACTGGGGATGAAAAACATTTTATTTC-TATGATTTTAGCGTTTTTTGCTGCGAGTGAT 133252 | | || || | | ||||||| || ||| || |||| || ||||| || |||||| Sbjct 654594 TGAAGCCTGAGGAGAGATATTTTATATCACATG-TTCTAGCTTTCTTTGCAGCAAGTGAT 654536 Query 133253 GGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCC 133312 || || || |||||| || | || |||| ||||||||| | | |||||| Sbjct 654535 GGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAGATTACAGAAGCC 654476 Query 133313 CGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACT 133372 || || ||||| | || ||||| |||||||| || ||||| | ||| | Sbjct 654475 CGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCCGAAATGTATAGTCTC 654416 Query 133373 CTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT--A 133430 || || || |||||||| |||||| || | | | | || ||||| || ||| | Sbjct 654415 CTTATCGACACTTACATTAAAGATTCCAAAGAAAGGGAATTTCTCTTCAATGCAATTGAA 654356 Query 133431 GCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGC 133490 ||| | ||||| | || ||||| | |||||||| | ||||| |||||| Sbjct 654355 ACGA--TGCCTTGCGTAAAGAAGAAGGCAGACTGGGCCTTGCGTTGGATTGGGGACAAAG 654298 Query 133491 GTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTG 133550 || | | || ||| |||| |||||||| | |||||| || || || || || Sbjct 654297 AAGCTACCTATGGAGAACGTGTCGTAGCTTTTGCAGCAGTAGAAGGAATCTTCTTTTCTG 654238 Query 133551 GTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTT 133609 | | || ||| || || || |||||||| || || || | | ||||| || ||| Sbjct 654237 GCTC-TTTTGCATCCATCTTCTGGCTTAAGAAACGAGGATTGATGCCTGGCCTCACATTT 654179 Query 133610 TCTAACGAACTTATTTCAAGGGACGAGG 133637 || || ||||||||| || || |||| Sbjct 654178 TCCAATGAACTTATTAGCAGAGATGAGG 654151 >seq261822 Length=583979 Score = 109 bits (120), Expect = 2e-18 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || |||||||| || || || || ||||||||||||| ||||| ||||| | ||| Sbjct 341548 GTCTTGACAGCTGTGTCGATGAGCCCCTCACGACCACCCATGGCATGAAAGAAGAACTCG 341489 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCG 302739 ||| || || | | ||||| |||| ||||| ||||| ||||||| || | Sbjct 341488 GTGGGTGTGAGGCCAGCCAGGTAGGAGTTCTCCACGAAGCCACGGCTCTCGGGCCCATAG 341429 Query 302740 TCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCA 302799 || |||| | ||||| |||||||||| || || | || ||||||| || || || Sbjct 341428 TCATCCTTGATGAAGTGAGGCAGGGTCCGGTGCTTGAATCCAAATGGGATCCGTTTGCCC 341369 Query 302800 TCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAA 302839 || ||||||||||| || | | | ||| | ||| |||| Sbjct 341368 TCCACGTTCTGCTGCCCGACGACAGCAATGACCTGGGAAA 341329 >seq256484 Length=824505 Score = 98.7 bits (108), Expect = 3e-15 Identities = 211/311 (68%), Gaps = 6/311 (2%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 ||||| |||||||| ||| | ||| ||||| || || ||||| |||| |||| | | Sbjct 273277 CTTTTCCCACCAACAGAATCTAATTCATCAATAAATATAACACAAGGAGCATTTGCTTTT 273218 Query 289081 GCAATTGC--AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAA 289138 || || | ||| | | ||| | ||| || || | ||| ||| |||| || ||| Sbjct 273217 GC--TTCCCTAAAAAGATTTCTGATGCGGCTGGCACCCACACCCACAAACATCTCATCAA 273160 Query 289139 ATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCA 289198 |||| || | || | | | || | |||| ||||| || || || || | || | Sbjct 273159 ATTCTGATCCAGAAGCGTAATAAAAAGGAACATCAGCTTCTCCAGCCACAGCTCGGGCAA 273100 Query 289199 GAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-C 289257 |||||||||| ||||| || |||||||| |||| |||| ||| ||||| | ||| | | Sbjct 273099 GAAGTGTCTTTCCTGTGCCTGGTGGTCCAACTAAAAGAATTCCTTTTGGAAGTTTACCTC 273040 Query 289258 CCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 | |||| | || |||| | || | || || || || |||| ||||| | ||| | | Sbjct 273039 CAAGCACA-GTAAATTTTTGTGGATTTTTCAAGAACTCAACAACTTCCTGCAATTCTTGT 272981 Query 289318 TTTGCCTCATC 289328 || || || || Sbjct 272980 TTAGCTTCTTC 272970 >seq253079 Length=1447471 Score = 98.7 bits (108), Expect = 3e-15 Identities = 211/311 (68%), Gaps = 6/311 (2%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 ||||| |||||||| ||| | ||| ||||| || || ||||| |||| |||| | | Sbjct 608404 CTTTTCCCACCAACAGAATCTAATTCATCAATAAATATAACACAAGGAGCATTTGCTTTT 608345 Query 289081 GCAATTGC--AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAA 289138 || || | ||| | | ||| | ||| || || | ||| ||| |||| || ||| Sbjct 608344 GC--TTCCCTAAAAAGATTTCTGATGCGGCTGGCACCCACACCCACAAACATCTCATCAA 608287 Query 289139 ATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCA 289198 |||| || | || | | | || | |||| ||||| || || || || | || | Sbjct 608286 ATTCTGATCCAGAAGCGTAATAAAAAGGAACATCAGCTTCTCCAGCCACAGCTCGGGCAA 608227 Query 289199 GAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-C 289257 |||||||||| ||||| || |||||||| |||| |||| ||| ||||| | ||| | | Sbjct 608226 GAAGTGTCTTTCCTGTGCCTGGTGGTCCAACTAAAAGAATTCCTTTTGGAAGTTTACCTC 608167 Query 289258 CCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 | |||| | || |||| | || | || || || || |||| ||||| | ||| | | Sbjct 608166 CAAGCACA-GTAAATTTTTGTGGATTTTTCAAGAACTCAACAACTTCCTGCAATTCTTGT 608108 Query 289318 TTTGCCTCATC 289328 || || || || Sbjct 608107 TTAGCTTCTTC 608097 >seq125322 Length=476 Score = 98.7 bits (108), Expect = 3e-15 Identities = 211/311 (68%), Gaps = 6/311 (2%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 ||||| |||||||| ||| | ||| ||||| || || ||||| |||| |||| | | Sbjct 474 CTTTTCCCACCAACAGAATCTAATTCATCAATAAATATAACACAAGGAGCATTTGCTTTT 415 Query 289081 GCAATTGC--AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAA 289138 || || | ||| | | ||| | ||| || || | ||| ||| |||| || ||| Sbjct 414 GC--TTCCCTAAAAAGATTTCTGATGCGGCTGGCACCCACACCCACAAACATCTCATCAA 357 Query 289139 ATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCA 289198 |||| || | || | | | || | |||| ||||| || || || || | || | Sbjct 356 ATTCTGATCCAGAAGCGTAATAAAAAGGAACATCAGCTTCTCCAGCCACAGCTCGGGCAA 297 Query 289199 GAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-C 289257 |||||||||| ||||| || |||||||| |||| |||| ||| ||||| | ||| | | Sbjct 296 GAAGTGTCTTTCCTGTGCCTGGTGGTCCAACTAAAAGAATTCCTTTTGGAAGTTTACCTC 237 Query 289258 CCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 | |||| | || |||| | || | || || || || |||| ||||| | ||| | | Sbjct 236 CAAGCACA-GTAAATTTTTGTGGATTTTTCAAGAACTCAACAACTTCCTGCAATTCTTGT 178 Query 289318 TTTGCCTCATC 289328 || || || || Sbjct 177 TTAGCTTCTTC 167 >seq262852 Length=263465 Score = 96.9 bits (106), Expect = 1e-14 Identities = 382/590 (65%), Gaps = 16/590 (3%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || || || || || || |||| | |||| ||||| |||| ||| ||| | Sbjct 13613 TTTGTCATCTTTCCTATCAAATACCACGATACTTGGAAGATGCATAAGAAAGCTGAAGCT 13554 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACC--CAGCCCACTGGGAAGCCC 133193 | |||||||| | || || ||| | ||||| ||| |||| |||||||||||| Sbjct 13553 TCCTTTTGGACAGCTGAGGAGGTGGATCTTTCCAAGGACATTCAGC--ACTGGGAAGCCC 13496 Query 133194 TTACTGGGGATGAAAAACATTTTATTTC-TATGATTTTAGCGTTTTTTGCTGCGAGTGAT 133252 | | | || || | | ||||||| | ||| || |||| || | ||| || |||||| Sbjct 13495 TGAAGCGTGAGGAGAGATATTTTATACCACATG-TTCTAGCTTTCTGTGCAGCAAGTGAT 13437 Query 133253 GGTATTGTTCTTGAAAATTTAGGAACA-CGGTTTATGGGAGAAGTTCAACTGGCCGAAGC 133311 || | || |||||| || || || | |||| | ||||||| | | ||||| Sbjct 13436 GGCAAAGTAAATGAAAACTT-GGTGCAGTGATTTAGCCAAAAAGTTCAGATTACGGAAGC 13378 Query 133312 CCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTC--TATCACATATTCT 133369 | | ||| ||||| | || ||| | |||||||| || ||||| | ||| ||| Sbjct 13377 CTGCTGCTTCTATGGCTTCCAAATTCCCATGGAAAACATACATTCGGAAATGTATAGTCT 13318 Query 133370 ACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT 133429 | || || || |||||||| |||||| || | | | | || ||||| || ||| Sbjct 13317 A--CTTATCGACACTTACATTAAAGATTCCAAAGAAAGGGAATTTCTCTTCAATGCAATT 13260 Query 133430 --AGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACA 133487 | ||| | |||||| | || ||||| | || ||||| | | ||||| | ||| Sbjct 13259 GAAACGA--TACCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCATTGGATTGGGAACA 13202 Query 133488 AGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCA 133547 | || | | || || | || || ||||| | |||||| || || || || Sbjct 13201 AAGAAGCTACCTATGGAGAATGTGTAGTAGCCTTTGCAGCAGTAGAAGGAATCTTCTTTT 13142 Query 133548 GTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTT 133607 ||| | || | || || || ||||| || || | || | ||||||| || | Sbjct 13141 CTGGCTCTTTTGGATCCATCTTCTGGCTCAAGAAACAAGGACTGATACCTGGCCTCACAT 13082 Query 133608 TTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 || | || ||||||||| || || |||| | ||| ||| |||||| Sbjct 13081 TTGCCAATGAACTTATTAGCAGAGATGAGGGTTTACACTGCGACTTTGCC 13032 >seq250257 Length=281617 Score = 96.9 bits (106), Expect = 1e-14 Identities = 224/330 (68%), Gaps = 11/330 (3%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAA-AAAACAGCAAGA 133134 ||||| || || || ||| | || | || || ||||| |||||||| |||| | | | Sbjct 104025 TTTGTCATCTTTCCTATTGAATACCATGATATCTGGCAAATGTATAAGAAAAGCGGAGGC 103966 Query 133135 TTTATTTTGGAC--TTCAACTGAAGTAGATTTATCCAAAGACC--CAGCCCACTGGGAAG 133190 || ||||||| || | || || ||| | ||||| ||| |||| ||||||||| Sbjct 103965 TTCCTTTTGGATAGTTGAG--GAGGTGGATCTTTCCAAGGACATTCAGC--ACTGGGAAG 103910 Query 133191 CCCTTACTGGGGATGAAAAACATTTTATTTC-TATGATTTTAGCGTTTTTTGCTGCGAGT 133249 |||| | || || | | ||||||| || ||| || |||| || ||||| || | Sbjct 103909 CCCTGAAGCCTGAGGAGAGATATTTTATATCACATG-TTCTAGCTTTCTTTGCAGCAGAT 103851 Query 133250 GATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAA 133309 ||||| || || |||||| || | || |||| ||||||||| | | ||| Sbjct 103850 GATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGTCAAGAAGTTCAGATTACAGAA 103791 Query 133310 GCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCT 133369 ||||| || ||||| | || ||||| |||||||| || |||||| | ||| | Sbjct 103790 GCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGT 103731 Query 133370 ACTCTAATTGATACTTACATCAAAGATACC 133399 || ||||| |||||||| |||||| || Sbjct 103730 CTCCTTATTGACACTTACATTAAAGATTCC 103701 >seq254358 Length=18439 Score = 93.3 bits (102), Expect = 1e-13 Identities = 175/250 (70%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 133154 GAAGTAGATTTATCCAAAGACC--CAGCCCACTGGGAAGCCCTTACTGGGGATGAAAAAC 133211 ||||| ||| | ||||| ||| |||| ||||||||||||| | || || ||| Sbjct 13008 GAAGTGGATCTTTCCAAGGACATTCAGC--ACTGGGAAGCCCTGAAGCCTGAGGAGAAAT 12951 Query 133212 ATTTTATTTC-TATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAAT 133270 ||||||| || |||| || | || || |||| || |||||||| || || |||||| Sbjct 12950 ATTTTATATCATATG-TTCTGGCTTTCTTTGTAGCAAGTGATGGCATAGTGAATGAAAAC 12892 Query 133271 TTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCG-TGCCTTTTATGGGCT 133329 || | || | |||| ||||||||| | | |||||| | || || | |||| | Sbjct 12891 TTGGTGGCATGATTTAGCCAAGAAGTTCAGATTACAGAAGCCTGCTGTCTCT-ATGGCTT 12833 Query 133330 ACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACAT 133389 || ||||| |||||||| || |||||| | ||| | || |||||||||||||| Sbjct 12832 CCAAATTGCCATGGAAAACATACATTCTGAAATGTATAATCTCCTTATTGATACTTACAT 12773 Query 133390 CAAAGATACC 133399 ||| || || Sbjct 12772 TAAAAATTCC 12763 >seq166132 Length=57562 Score = 84.2 bits (92), Expect = 6e-11 Identities = 218/327 (67%), Gaps = 9/327 (3%) Strand=Plus/Plus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || || || || | || | || ||||||||||||||| | ||| | | | Sbjct 30552 TTTGTCATCTTTCCTATAGAATACCATGATATTTGGCAGATGTATGAGAAAGCTGAGGCT 30611 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTT 133195 | ||||||| || |||| |||| | | | || ||| | | |||||||||||| Sbjct 30612 TCCTTTTGGA---CAGCTGAGGTAGGTCTTTAAAAGGACATACAGCTCTGGGAAGCCCTG 30668 Query 133196 ACTGGGGATGAAAAACATTTTATTTC-TATGATTTTAGCGTTTTTTGCTGCGAGTGATGG 133254 | || || | | | ||||| || ||| |||| || || ||| | || |||||||| Sbjct 30669 AAGCCTGAAGAGAGATACTTTATATCACATG-TTTTGGCTTTCTTTACAGCAAGTGATGG 30727 Query 133255 TATTGTTCTTGAAAATTT--AGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCC 133312 | || |||||| || ||| || |||| || |||||| | | |||||| Sbjct 30728 CACAGTAAATGAAAACTTGGCGGAGCA--ATTTAGACAAGCAGTTCAGATTACAGAAGCC 30785 Query 133313 CGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACT 133372 ||| || ||||| | || |||| |||||||| || |||||| | ||| | | Sbjct 30786 CGTTGTTTCTATGGCTTCCAAATTGTCATGGAAAACATACATTCTGAAATGTATAGTCTT 30845 Query 133373 CTAATTGATACTTACATCAAAGATACC 133399 || || ||| ||||||| |||||| || Sbjct 30846 CTTATCGATGCTTACATTAAAGATTCC 30872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1466743304609308