Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq249408 132 4e-26 seq78631 132 4e-26 seq43725 131 1e-25 seq260417 125 5e-24 seq261730 114 1e-20 seq256153 114 1e-20 seq243700 114 1e-20 seq237447 114 1e-20 seq254768 104 2e-17 seq262164 95.1 9e-15 seq251325 91.5 1e-13 >seq249408 Length=399222 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 143623 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 143682 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||| |||||||| || ||||| || || || || Sbjct 143683 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 143742 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || ||| ||| |||||| || || || |||| || |||||||| || || Sbjct 143743 CTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGT 143802 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || ||||||||||| Sbjct 143803 CTTTCCCGTCAGGGTTTTTACGAAAATCTGCATTTT 143838 >seq78631 Length=346750 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 179200 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 179259 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||| |||||||| || ||||| || || || || Sbjct 179260 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 179319 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || ||| ||| |||||| || || || |||| || |||||||| || || Sbjct 179320 CTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGT 179379 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||| || || | |||||| || || |||||||| || Sbjct 179380 TTTTCCCGTCAGGGTTTTTACGAAAATCTGCATCTT 179415 >seq43725 Length=1898 Score = 131 bits (144), Expect = 1e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||| |||| || || ||||| || || || ||||| || || | | |||||| Sbjct 1337 ACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCC 1278 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| | |||||||| ||||| || || || || ||||| || Sbjct 1277 ATCTTCCAGCTGCTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCCTCCTT 1218 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || |||||| | || |||||| | || || ||||| || || Sbjct 1217 GTCTTGGATCTTGGCCTTGACATTCTCAGTGGTGTCACTGGGCTCCACCTCAAGGGTGAT 1158 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||| || ||||||||||| ||||| ||||||||| Sbjct 1157 AGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCATT 1121 >seq260417 Length=1194950 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || || | |||||| |||| || || ||||| || || || ||||| || || | Sbjct 431931 TCCCCCTCTAAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 431872 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| || || || || || ||| | |||||||| ||||| || || || Sbjct 431871 CAGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGG 431812 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| | || |||||| | || | |||||| | || || Sbjct 431811 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 431752 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || |||||||| || ||||||||||| ||||| ||||||||| Sbjct 431751 CTCGAGGGTGATAGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCATT 431703 >seq261730 Length=739691 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || || || Sbjct 78739 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCGTC 78680 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||| |||||||| || ||||| | || || || Sbjct 78679 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTGCTTCCTTATC 78620 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 |||| || ||| ||| |||||| || || || | || || |||||||| || || Sbjct 78619 CTGTATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGATCAACCTCAAGAGTGATGGT 78560 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || ||||| || || Sbjct 78559 CTTTCCCGTCAGGGTTTTTACGAAAATCTGTATCTT 78524 >seq256153 Length=874984 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 311678 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 311737 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||| |||||| | || ||||| | || || || Sbjct 311738 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGAACAGGAGGAATTCTTTCCTTATC 311797 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || ||| ||| |||||| || || || |||| | |||||||| || || Sbjct 311798 CTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCATCCTCAAGAGTGATGGT 311857 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || |||||||| || Sbjct 311858 CTTTCCTGTCAGGGTTTTTACGAAAATCTGCATCTT 311893 >seq243700 Length=14829 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAGAAT 29632 || ||| | | |||| ||||| || ||||||||||| || || | ||| | | | || Sbjct 8883 CAACACAAGAAGAAGAGTGGACTCCTTTTGAATGTTGTAGTCACACAAAG-TACTTCCAT 8825 Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692 | || ||||||||||||||| | |||| ||| |||||||| || ||||| || || || | Sbjct 8824 CTTCCAGTTGTTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTAT 8765 Query 29693 CTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 | || | || ||| ||| |||||| || || || |||| || |||||||| || Sbjct 8764 CCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTCATGA 8705 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | | || || | |||||| || || |||||||| || Sbjct 8704 TCTGTCCCGTCAGGGTTTTTACGAAAATCTGCATCTT 8668 >seq237447 Length=29837 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 13444 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGATAAAGTACGTCCATC 13385 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| || |||||| | |||| ||| |||||||| || |||| || || || || Sbjct 13384 TTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGATGAATTCCTTCCTTATC 13325 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || ||| ||| ||||| || | || |||| || |||||||| || || Sbjct 13324 CTGGATCTTGGCTTTCACATTTTCTGTTGTACCCGAGGGTTCAACCTCAAGAGTGATGGT 13265 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| ||||| |||||||| || Sbjct 13264 CTTTCCTGTCAGGGTTTTTACAAAAATCTGCATCTT 13229 >seq254768 Length=650996 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | ||||| |||| || || |||||||| || || ||||| ||||| | Sbjct 218203 CCTCCCCTGAGGCGCAGGACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGAG 218262 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||||||| | || | || ||||| || || || Sbjct 218263 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGG 218322 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| || || || | || ||||| | || | |||||| | || || Sbjct 218323 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 218382 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || |||||||| | ||| || || || ||||||||||| Sbjct 218383 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 218432 >seq262164 Length=887232 Score = 95.1 bits (104), Expect = 9e-15 Identities = 155/221 (70%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 29573 GCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAAT 29632 ||| ||| | ||||||| |||| || ||||||||||| || || | | || || || Sbjct 793351 GCAACACAAGATGAAGCATGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCAT 793292 Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692 | || ||||| ||||||||| | |||| ||| |||||||| || ||||| | || || | Sbjct 793291 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCGGGAGGAATTTCTTCCTTAT 793232 Query 29693 CTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 | || | || ||| | | ||||| || || || |||| || ||||| | || | Sbjct 793231 CCTGGATCTTGGCTTTCAAATTTTCTGTTGTATCCAAAGGTTCAACCTCAAGCATGATGG 793172 Query 29753 --TTTTG--CCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| |||| ||||| ||||| |||||||| || Sbjct 793171 TCTTTTGCACCAG----GGTTTCTACAAAAATCTGCATCTT 793135 >seq251325 Length=352111 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || ||||||||||| || || | | || | ||| Sbjct 311092 CAACACAATATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATC 311151 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||| || ||||| || ||||| || ||||| | Sbjct 311152 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGGAATTCCTTCTTTATT 311211 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 | | || ||| ||| |||||| || || || ||| || |||||||| || || Sbjct 311212 CCGGATCTTGGCTTTTACATTTTCTATTGTATCTGAGGATTCAACCTCAAGAGTGATGGT 311271 Query 29754 -TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||| ||| || ||||| ||| |||||||| || Sbjct 311272 CTTTCCCATCGGAGTTTTTATGAAA-ATCTGCATCTT 311307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 383955888560844