Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq243700 105 7e-18 seq249408 104 2e-17 seq78631 100 3e-16 seq261730 91.5 1e-13 seq256153 91.5 1e-13 >seq243700 Length=14829 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 ||| || | | ||| || || || ||||| |||||||| || | || || || || Sbjct 8883 CAACACAAGAAGAAGAGTGGACTCCTTTTGAATGTTGTAGTCACACAAAGTACTTCCATC 8824 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||| |||||||| |||||| ||||||| | |||||||| ||||| || ||||| || || Sbjct 8823 TTCCAGTTGTTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 8764 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 || || ||| | | ||| | || || | |||||| || |||| ||||| | Sbjct 8763 CTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTCATGAT 8704 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || |||| ||||||||||| || ||||| Sbjct 8703 CTGTCCCGTCAGGGTTTTTACGAAAATCTGCAT 8671 >seq249408 Length=399222 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 137257 ||| || | ||||| || || || ||||| |||||||| || || || | || | | Sbjct 143623 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 143681 Query 137258 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 137317 |||| ||||| || |||||| ||||||| | |||||||| ||||| || ||||| || | Sbjct 143682 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTAT 143741 Query 137318 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCG 137377 | || || ||| | | ||| | || || | |||||| || |||| ||| | | Sbjct 143742 CCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGG 143801 Query 137378 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || |||| ||||||||||| || ||||| Sbjct 143802 TCTTTCCCGTCAGGGTTTTTACGAAAATCTGCAT 143835 >seq78631 Length=346750 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 137257 ||| || | ||||| || || || ||||| |||||||| || || || | || | | Sbjct 179200 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 179258 Query 137258 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 137317 |||| ||||| || |||||| ||||||| | |||||||| ||||| || ||||| || | Sbjct 179259 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTAT 179318 Query 137318 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCG 137377 | || || ||| | | ||| | || || | |||||| || |||| ||| | | Sbjct 179319 CCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGG 179378 Query 137378 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | || || |||| ||||||||||| || ||||| Sbjct 179379 TTTTTCCCGTCAGGGTTTTTACGAAAATCTGCAT 179412 >seq261730 Length=739691 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 ||| || | ||||| || || || ||||| |||||||| || || || | ||| Sbjct 78739 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCGTC 78680 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||| ||||| || |||||| ||||||| | |||||||| ||||| || |||| || || Sbjct 78679 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTGCTTCCTTATC 78620 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 || || ||| | | ||| | || || | ||| || || |||| ||| | || Sbjct 78619 CTGTATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGATCAACCTCAAGAGTGATGGT 78560 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| || |||| ||||||||||| || || || Sbjct 78559 CTTTCCCGTCAGGGTTTTTACGAAAATCTGTAT 78527 >seq256153 Length=874984 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 137257 ||| || | ||||| || || || ||||| |||||||| || || || | || | | Sbjct 311678 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 311736 Query 137258 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 137317 |||| ||||| || |||||| ||||||| | |||||| | ||||| || | ||| || | Sbjct 311737 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGAACAGGAGGAATTCTTTCCTTAT 311796 Query 137318 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCG 137377 | || || ||| | | ||| | || || | |||||| | |||| ||| | | Sbjct 311797 CCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCATCCTCAAGAGTGATGG 311856 Query 137378 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || |||| ||||||||||| || ||||| Sbjct 311857 TCTTTCCTGTCAGGGTTTTTACGAAAATCTGCAT 311890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 486900757828800