Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq259686 100 5e-16 seq263927 96.9 6e-15 seq260357 93.3 8e-14 seq250175 91.5 3e-13 seq252703 89.7 9e-13 seq39485 86.0 1e-11 >seq259686 Length=587844 Score = 100 bits (110), Expect = 5e-16 Identities = 211/315 (67%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 48961 CATCCAAAGAAGGTACTTCTCTTATTTCTGGATATGCTATTTTTTCGAATATGATTTGAG 49020 |||||||| | ||||| |||||||||||| || ||| | || | || | Sbjct 439154 CATCCAAAACTTGAACTTCCTCTATTTCTGGATAAAAAATGCGTTCACAAATCAGCTGTG 439213 Query 49021 CTATTCTATCACCCTTGGATACATTAAATGGTATAGAACTGAAATTAAATAATAGAACAC 49080 | |||| ||||||||| || | ||| | | | ||||||||||| | ||||| Sbjct 439214 CAATTCGATCACCCTTTTTCACTTCAAACTTTTCTGTGCCAAAATTAAATAACACAACAC 439273 Query 49081 CTACGTTACCTCTATAGTCTGAGTCAATTACACCAGCACCTACGTCTATAAAATAATTAT 49140 | || || |||||||||||| || || |||||||| ||||| ||||| || | || Sbjct 439274 CAACATTTCCTCTATAGTCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTG 439333 Query 49141 AAGCAAGCCCTGATCTAGGAGCTATTCTACCGTAGTATCCATTAGGTATTTTTATAATTA 49200 ||| | || || | ||||||| ||| || || ||||| ||| | ||| | Sbjct 439334 CAGCCAAGCCAGAACATGGAGCTACTCTTCCATAACATCCAGAAGGAAGGGCTATCTGAA 439393 Query 49201 TATCTGTTTTTATTAATTCCTTATCCATAGGTTCTATTACATAATCATACGCGCTATATA 49260 | |||||||| | | | || ||||| ||| || | ||||||||| || || || | Sbjct 439394 TGTCTGTTTTCACAAGGGCTTTCTCCATGGGTGGTACTGTATAATCATAGGCACTGTACA 439453 Query 49261 AGTCATAACCAGCCG 49275 |||||| || |||| Sbjct 439454 GGTCATAGCCTGCCG 439468 >seq263927 Length=651112 Score = 96.9 bits (106), Expect = 6e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 |||||| ||| | |||||||||| | |||||||||| | || || || || ||||| Sbjct 447761 GATAGCTGCAGCTCTGTGGTGGTACTTTGTATCTAAAGGAGTTGAGTATTTGGACACAGT 447702 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 |||||| || || ||||| || || || || || || || ||||||||||| | Sbjct 447701 GTTTTTTATCCTAAGGAAGAAAAACAACCAAGTGTCTTTCCTTCATGTATATCATCACTG 447642 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 || |||||||| || | ||| | || ||||| ||| ||||||| || || Sbjct 447641 CACAATGTTTACATTGTGGTGGATTGGAATTAAGTGGGTTGCAGGGGGACA 447591 >seq260357 Length=355543 Score = 93.3 bits (102), Expect = 8e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 49062 AAATTAAATAATAGAACACCTACGTTACCTCTATAGTCTGAGTCAATTACACCAGCACCT 49121 ||||||||||| | |||||| || || |||||||||||| || || |||||||| ||| Sbjct 322356 AAATTAAATAACACAACACCAACATTTCCTCTATAGTCTTCATCTATGACACCAGCTCCT 322297 Query 49122 ACGTCTATAAAATAATTATAAGCAAGCCCTGATCTAGGAGCTATTCTACCGTAGTATCCA 49181 || ||||| || | || ||| | || || | ||||||| ||| || || ||||| Sbjct 322296 ACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGCTACTCTTCCATAACATCCA 322237 Query 49182 TTAGGTATTTTTATAATTATATCTGTTTTTATTAATTCCTTATCCATAGGTTCTATTACA 49241 ||| | ||| || |||||||| | | | || |||| ||| || | | Sbjct 322236 GAAGGAAGGGCTATCTGAATGTCTGTTTTCACAAGGGCTTTCCCCATGGGTGGTACTGTA 322177 Query 49242 TAATCATACGCGCTATATAAGTCATAACCAGCCG 49275 |||||||| || || || | |||||| || |||| Sbjct 322176 TAATCATAGGCACTGTACAGGTCATAGCCTGCCG 322143 >seq250175 Length=443462 Score = 91.5 bits (100), Expect = 3e-13 Identities = 209/315 (66%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 48961 CATCCAAAGAAGGTACTTCTCTTATTTCTGGATATGCTATTTTTTCGAATATGATTTGAG 49020 |||||||| | ||||| |||||||||||| || ||| | || | || | Sbjct 398246 CATCCAAAACTTGAACTTCCTCTATTTCTGGATAAAAAATGCATTCACAAATCAGCTGTG 398187 Query 49021 CTATTCTATCACCCTTGGATACATTAAATGGTATAGAACTGAAATTAAATAATAGAACAC 49080 | |||| ||||||||| || | ||| | | | ||||||||||| | ||||| Sbjct 398186 CAATTCGATCACCCTTTTTCACTTCAAACTTTTCTGTGCCAAAATTAAATAACACAACAC 398127 Query 49081 CTACGTTACCTCTATAGTCTGAGTCAATTACACCAGCACCTACGTCTATAAAATAATTAT 49140 | || || |||||||||||| || || |||||||| ||||| ||||| || | || Sbjct 398126 CAACATTTCCTCTATAGTCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTG 398067 Query 49141 AAGCAAGCCCTGATCTAGGAGCTATTCTACCGTAGTATCCATTAGGTATTTTTATAATTA 49200 ||| | || || | ||||||| ||| || || ||||| ||| | ||| | Sbjct 398066 CAGCCAAGCCAGAACGTGGAGCTACTCTTCCATAACATCCAGAAGGAAGGGCTATCTGAA 398007 Query 49201 TATCTGTTTTTATTAATTCCTTATCCATAGGTTCTATTACATAATCATACGCGCTATATA 49260 | |||||||| | | | || |||| ||| || | ||||||||| || || || | Sbjct 398006 TGTCTGTTTTCACAAGGGCTTTCCCCATGGGTGGTACTGTATAATCATAGGCACTGTACA 397947 Query 49261 AGTCATAACCAGCCG 49275 | |||| || |||| Sbjct 397946 GGCCATAGCCTGCCG 397932 >seq252703 Length=225757 Score = 89.7 bits (98), Expect = 9e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 49062 AAATTAAATAATAGAACACCTACGTTACCTCTATAGTCTGAGTCAATTACACCAGCACCT 49121 ||||||||||| | |||||| || || |||||||||||| || || |||||||| ||| Sbjct 208524 AAATTAAATAACACAACACCAACATTTCCTCTATAGTCTTCATCTATGACACCAGCTCCT 208465 Query 49122 ACGTCTATAAAATAATTATAAGCAAGCCCTGATCTAGGAGCTATTCTACCGTAGTATCCA 49181 || ||||| || | || ||| | || || | ||||||| ||| | || ||||| Sbjct 208464 ACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGCTACTCTTCTATAACATCCA 208405 Query 49182 TTAGGTATTTTTATAATTATATCTGTTTTTATTAATTCCTTATCCATAGGTTCTATTACA 49241 ||| | ||| || |||||||| | | | || |||| ||| || | | Sbjct 208404 GAAGGAAGGGCTATCTGAATGTCTGTTTTCACAAGGGCTTTCCCCATGGGTGGTACTGTA 208345 Query 49242 TAATCATACGCGCTATATAAGTCATAACCAGCCG 49275 |||||||| || || || | |||||| || |||| Sbjct 208344 TAATCATAGGCACTGTACAGGTCATAGCCTGCCG 208311 >seq39485 Length=23403 Score = 86.0 bits (94), Expect = 1e-11 Identities = 208/315 (66%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 48961 CATCCAAAGAAGGTACTTCTCTTATTTCTGGATATGCTATTTTTTCGAATATGATTTGAG 49020 ||||||||| | ||||| |||||||||||| || | ||| | || | || | Sbjct 18149 CATCCAAAGCTTGAACTTCCTCTATTTCTGGATAAAAAATGTGTTCACAAATCAGCTGTG 18208 Query 49021 CTATTCTATCACCCTTGGATACATTAAATGGTATAGAACTGAAATTAAATAATAGAACAC 49080 | |||| ||||||||| || | ||| | | | ||||||||||| | ||||| Sbjct 18209 CAATTCGATCACCCTTTTGCACTTCAAACTTTTCTGTGCCAAAATTAAATAACACAACAC 18268 Query 49081 CTACGTTACCTCTATAGTCTGAGTCAATTACACCAGCACCTACGTCTATAAAATAATTAT 49140 | || || |||||||||||| | || |||||| ||||| ||||| || | || Sbjct 18269 CAACATTTCCTCTATAGTCTTCATTTATGACACCACTTCCTACATCTATGAAGTGTTTTG 18328 Query 49141 AAGCAAGCCCTGATCTAGGAGCTATTCTACCGTAGTATCCATTAGGTATTTTTATAATTA 49200 ||| | || || | ||||||| ||| || || ||||| ||| | ||| | Sbjct 18329 CAGCCAAGCCAGAACGTGGAGCTACTCTTCCATAACATCCAGAAGGAAGGGCTATCTGAA 18388 Query 49201 TATCTGTTTTTATTAATTCCTTATCCATAGGTTCTATTACATAATCATACGCGCTATATA 49260 | ||| |||| | | | || |||| ||| || | ||||||||| || || || | Sbjct 18389 TGTCTATTTTCACAAGGGCTTTCCCCATGGGTGGTACTGTATAATCATAGGCACTGTACA 18448 Query 49261 AGTCATAACCAGCCG 49275 |||||| || |||| Sbjct 18449 GGTCATAGCCTGCCG 18463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 900372531258240