Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30]
269,084 sequences; 3,286,013,499 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq261297 107 2e-18
seq262957 104 3e-17
seq260417 104 3e-17
seq259402 104 3e-17
seq250489 104 3e-17
seq250217 104 3e-17
>seq261297
Length=436841
Score = 107 bits (118), Expect = 2e-18
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715
||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||
Sbjct 195760 ATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 195701
Query 8716 TCCCCGACGAGGAG 8729
||||||||| ||||
Sbjct 195700 TCCCCGACGGGGAG 195687
Score = 100 bits (110), Expect = 4e-16
Identities = 68/75 (91%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785
|| ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||
Sbjct 195761 CATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 195702
Query 11786 TTCCCCGACGAGGAG 11800
|||||||||| ||||
Sbjct 195701 TTCCCCGACGGGGAG 195687
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 195687 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 195746
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 195747 TACTAACGAGGA 195758
>seq262957
Length=47518
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 2601 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 2542
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 2541 CCCGACGGGGAG 2530
Score = 102 bits (112), Expect = 1e-16
Identities = 70/78 (90%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 2601 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 2542
Query 11789 CCCGACGAGGAGGGAGGT 11806
||||||| ||||| ||||
Sbjct 2541 CCCGACGGGGAGGAAGGT 2524
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| | |||||||||||||||| | |||| |||||||| |||||||||
Sbjct 2530 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 2589
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 2590 TACTAACGAGGA 2601
>seq260417
Length=1194950
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 405993 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 406052
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 406053 CCCGACGGGGAG 406064
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 416954 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 417013
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 417014 CCCGACGGGGAG 417025
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 405992 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 406051
Query 11788 CCCCGACGAGGAG 11800
|||||||| ||||
Sbjct 406052 CCCCGACGGGGAG 406064
Score = 100 bits (110), Expect = 4e-16
Identities = 68/75 (91%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785
|| ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||
Sbjct 416951 CACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 417010
Query 11786 TTCCCCGACGAGGAG 11800
|||||||||| ||||
Sbjct 417011 TTCCCCGACGGGGAG 417025
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 139350 CAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCA 139409
|| |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||
Sbjct 406067 CATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 406008
Query 139410 CTATACTAACGAGGA 139424
|||||||||||||||
Sbjct 406007 CTATACTAACGAGGA 405993
Score = 95.1 bits (104), Expect = 2e-14
Identities = 71/82 (87%), Gaps = 1/82 (1%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 417025 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 416966
Query 139413 TACTAACGAGGA-TTTTGGTAC 139433
|||||||||||| | || ||||
Sbjct 416965 TACTAACGAGGAGTGTTTGTAC 416944
>seq259402
Length=62883
Score = 104 bits (114), Expect = 3e-17
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 24105 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 24046
Query 8718 CCCGACGAGGAGCAG 8732
||||||| |||| ||
Sbjct 24045 CCCGACGGGGAGGAG 24031
Score = 104 bits (114), Expect = 3e-17
Identities = 68/74 (92%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 24106 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 24047
Query 11788 CCCCGACGAGGAGG 11801
|||||||| |||||
Sbjct 24046 CCCCGACGGGGAGG 24033
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 24034 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 24093
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 24094 TACTAACGAGGA 24105
>seq250489
Length=40374
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 4510 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4451
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 4450 CCCGACGGGGAG 4439
Score = 100 bits (110), Expect = 4e-16
Identities = 67/75 (89%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 4439 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4498
Query 139413 TACTAACGAGGATTT 139427
|||||||||||||||
Sbjct 4499 TACTAACGAGGATTT 4513
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 4510 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4451
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 4450 CCCGACGGGGAG 4439
>seq250217
Length=729188
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 435494 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 435435
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 435434 CCCGACGGGGAG 435423
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||||||||||||||||||| |||| |||| ||||| | |||||||||||||||||||||
Sbjct 435494 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 435435
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 435434 CCCGACGGGGAGG 435422
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 435423 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 435482
Query 139413 TACTAACGAGGATTT 139427
|||||||||||| ||
Sbjct 435483 TACTAACGAGGAGTT 435497
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 650648923872960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |