Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq93685 152 5e-32 seq260417 149 6e-31 seq254768 147 2e-30 seq43725 127 2e-24 seq263758 114 1e-20 seq78631 89.7 5e-13 seq249408 84.2 2e-11 >seq93685 Length=1386 Score = 152 bits (168), Expect = 5e-32 Identities = 157/203 (77%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || |||||||| || ||| | | | ||||| |||||||||| Sbjct 604 GGTGGACTCTTTCTGGATGTTGTAATCAGACAGAGTGCGGCCA-TCCTCCAGCTGCTTGC 662 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||||| ||||||||| || || ||||| ||||| || |||||| || Sbjct 663 CAGCGAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCT 722 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| ||||||| || || | ||||| ||| ||||||||||| | Sbjct 723 TGACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 782 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || ||||| ||||||||| || Sbjct 783 TCTTCACGAAGATCTGCATGCCT 805 Score = 134 bits (148), Expect = 1e-26 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| || ||||| || |||||||| | ||| ||| || ||||||||||| Sbjct 832 GGTGGATTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCC 891 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| || |||||||| ||||| || |||||| ||| Sbjct 892 AGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTT 951 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 952 GACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 1011 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || ||||| ||||||||| || Sbjct 1012 CTTCACGAAGATCTGCATGCCT 1033 Score = 127 bits (140), Expect = 2e-24 Identities = 151/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || |||||||| | ||| | | | || || ||||||||||| Sbjct 1061 GTGGATTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA-TCTTCCAGCTGCTTGCC 1119 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || |||||||| ||||| || |||||| ||| Sbjct 1120 AGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTT 1179 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 1180 GACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 1239 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || ||||| ||||||||| || Sbjct 1240 CTTCACGAAGATCTGCATGCCT 1261 >seq260417 Length=1194950 Score = 149 bits (164), Expect = 6e-31 Identities = 154/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||||||||||||||| ||||| ||| || ||| | | | ||||| |||||||| | Sbjct 432357 GGTGGACTCTTTCTGTATGTTGTAGTCGGACAGGGTGCGGCCA-TCCTCCAGCTGCTTCC 432299 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | | ||||||||| || ||||||||||||||||| |||||| || Sbjct 432298 CGGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCCT 432239 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| ||||||| || |||| ||||| ||| || || ||||| | Sbjct 432238 TGACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTCCCAGTCAGGG 432179 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 432178 TCTTCACGAAAATCTGCAT 432160 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| ||| || ||| | | | || || |||||||| | Sbjct 432129 GGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTCC 432071 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | | ||||||||| || ||||||||||||||||| |||||| || Sbjct 432070 CGGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCCT 432011 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| |||||||||| |||| ||||| ||| || || ||||| | Sbjct 432010 TGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTCCCAGTCAGGG 431951 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 431950 TCTTCACGAAGATCTGCAT 431932 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| | | | || || |||||||| | Sbjct 431901 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTCC 431843 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | | ||||||||| || ||||||||||||||||| |||||| || Sbjct 431842 CGGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCCT 431783 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| |||||||||| |||| ||||| ||||| || || | | Sbjct 431782 TGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATAGTTTTACCCGTTAAGG 431723 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| Sbjct 431722 TTTTCACAAAGATCTGCAT 431704 >seq254768 Length=650996 Score = 147 bits (162), Expect = 2e-30 Identities = 156/203 (77%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || |||||||| || ||| | | | ||||| |||||||||| Sbjct 218004 GGTGGACTCTTTCTGGATGTTGTAATCAGACAGAGTGCGGCCA-TCCTCCAGCTGCTTGC 218062 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| ||||||||| || || ||||| ||||| || |||||| || Sbjct 218063 CAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCT 218122 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| |||||||||| || | ||||| ||| ||||| ||||| | Sbjct 218123 TGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 218182 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || ||||| ||||||||| || Sbjct 218183 TCTTCACGAAGATCTGCATGCCT 218205 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || |||||||| | ||| | | | || || ||||||||||| Sbjct 218233 GTGGATTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA-TCTTCCAGCTGCTTGCC 218291 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || |||||||| ||||| || |||||| ||| Sbjct 218292 AGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTT 218351 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 218352 GACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 218411 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 218412 CTTCACGAAGATCTGCAT 218429 >seq43725 Length=1898 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || ||||| || || ||| ||| || |||||||| || Sbjct 1775 GGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGGCCGTCTTCCAGCTGCTTCCC 1716 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | | ||||||||| || ||||||||||||||||| |||||| ||| Sbjct 1715 GGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCCTT 1656 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| ||||||| || |||| ||||| ||| || |||| ||| || Sbjct 1655 GACGTTCTCAGTGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTCCCGGACAGGGT 1596 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1595 CTTCACGAAGATCTGCAT 1578 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||||||||| || ||||| ||| || ||| ||| || ||| Sbjct 1555 AAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGC 1496 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || | | ||||||||| | ||||||||||||||||| |||| Sbjct 1495 TGCTTCCCAGCAAAGATCAATCTCTGCTGGTCAGAGGGGATGCCTTCCTTGTCTTGGATC 1436 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| ||||| ||||||| || |||| ||| | ||| || || Sbjct 1435 TTGGCCTTGACATTCTCAGTGGTGTCACTGGGCTCTACCTCGAGGGTAATGGTCTTCCCA 1376 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || || |||||||| Sbjct 1375 GTCAGGGTCTTCACAAAGATCTGCAT 1350 >seq263758 Length=155273 Score = 114 bits (126), Expect = 1e-20 Identities = 145/198 (73%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||||||||| || || |||||||| || ||| | ||| || |||| ||| || Sbjct 104908 GTGGACTCTTTTTGGATGTTGTAATCAGACAGAGTGCAGCCGTCTTCCAGCTACTTCCCT 104849 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| ||||||||| |||||||||||| |||||||||||||| || ||||| ||| Sbjct 104848 GCGAAAATGAGCCTCTGCTGGTCGGG-GGGATGCCTTCCTTATCCTGCATCTTGGCCTTC 104790 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| |||||||||| || | || || | | ||| ||||| || Sbjct 104789 ACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGGGATGATCTTGTTGGTCACGGTC 104730 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 104729 TTCACAAAGATCTGCATG 104712 >seq78631 Length=346750 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| || || || ||||| || || || | | | || || || |||||||| Sbjct 179216 GTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTGCTTGCC 179274 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || | |||||| || ||||| || |||||||| || |||||| || Sbjct 179275 AGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTT 179334 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || || | ||| || || || | |||| |||||| || ||||| || Sbjct 179335 CACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGTTTTTCCCGTCAGGGT 179394 Query 133643 TTTTACGAAAATCTGCAT 133660 |||||||||||||||||| Sbjct 179395 TTTTACGAAAATCTGCAT 179412 >seq249408 Length=399222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| || || || ||||| || || || | | | || || || |||||||| Sbjct 143639 GTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTGCTTGCC 143697 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || | |||||| || ||||| || |||||||| || |||||| || Sbjct 143698 AGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTT 143757 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || || | ||| || || || | |||| ||| || || ||||| || Sbjct 143758 CACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGTCTTTCCCGTCAGGGT 143817 Query 133643 TTTTACGAAAATCTGCAT 133660 |||||||||||||||||| Sbjct 143818 TTTTACGAAAATCTGCAT 143835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481794789968160