Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq262256 221 1e-52 seq261757 221 1e-52 seq252022 219 5e-52 seq256662 98.7 1e-15 >seq262256 Length=1750713 Score = 221 bits (244), Expect = 1e-52 Identities = 614/934 (66%), Gaps = 21/934 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||| | ||||||| |||| ||| || | ||||||||| || || |||| || Sbjct 1300024 CCAGAGCTTTATGTCTTAGATGCTCATCCAAACACTGGACAGCAAAGGGGTCTATGTCAG 1299965 Query 162119 CATCGAACTTGTTCGCGAACA---GGTGATG-CGAGTTCTTCAATATCCAATTAAGATCC 162174 || ||||| || || || | ||||||| || || ||||| || | || Sbjct 1299964 TGTCAAACTTATTGGCAAAGAAGTGGTGATGACG-------CAGCATCCAGTTCAAGTCA 1299912 Query 162175 CCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCC 162234 ||| ||||| ||||||||||| || || || || ||| |||| || || || |||| Sbjct 1299911 CCCATCCCGAAAACGCACACGGAGCGTACATGGACCCCGTTGCAGGGTGGGTAGGGGGCA 1299852 Query 162235 CCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATG 162294 || | | |||||| || || |||| |||||||| || ||||||| | ||||||||| Sbjct 1299851 CCCTTGGACACATCGCCTTCAAAGTAGTGCCACTTGACAAACCTAGCCACCGCCTGCATG 1299792 Query 162295 TCGGAGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTG 162353 || || |||| ||||| | || | || || || || || || | || | || || Sbjct 1299791 TCAGACATGTCATACTT-TGGGCTCAAGGACAGCGCGCCGGGGACTTCTGGGATCCTTTG 1299733 Query 162354 TAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTC 162413 | ||| ||||| || | ||| ||||| || || || || || | ||| || || |||| Sbjct 1299732 AATAGTGGCCCAGAGATATTCATCTGGGCTGTATGTGTCTTTTGCCCATTCTATAAACTT 1299673 Query 162414 CCTGACCGTTTTATCGTAT---AGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTA 162470 || |||| |||| || | || || ||| ||| | || | ||| || Sbjct 1299672 TTGGA---TTTTTTCGTTCTCCAGCACATATCCCACATAGTCCCTACTGACTACAAAATA 1299616 Query 162471 CGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCC-GTGT 162529 || || || ||||| | ||| | | ||||||| | ||||| || | ||| |||| Sbjct 1299615 GGCACTGCCTGAAAAAATAGGTGTTTCAAGAGGAGGGCGTGCTTTG-CTGGTCCCCGTGT 1299557 Query 162530 TGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAG 162589 || | | | || | | || | | | ||| |||||| || ||| ||| | Sbjct 1299556 TGGTGAGCTTCCCATTAATAACTTCATAACGCTTTTTCCACCGATCCTCTTTATTGGAGG 1299497 Query 162590 ACGGGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCT 162649 | | || || || || |||| ||| || | ||| |||| | || || | Sbjct 1299496 GCATCTTCTCAGTTTCCAGGTTGTTTTCGCCCATCAGCGACTTGAGCTTCCTGACAATTT 1299437 Query 162650 CTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAA 162709 | || ||||| |||| ||||| || | || || ||||| || | |||||||| | Sbjct 1299436 CCAGGTTGGTTTTAATAGGAAAATCCATACCACAAAGATTGATCAAGTATTTCCAGTCTG 1299377 Query 162710 CGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACG 162769 | || || | |||||| |||| | ||||| || || ||||| || || |||||||| | Sbjct 1299376 CACTCAGGCTGTACAGGTCCTTCATGCAGTTGAGGTCCGCCTGAACCCGGCTCCACGAAG 1299317 Query 162770 CGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCC 162829 | || || |||||||||| | | |||| | ||||| || |||||| || | || | Sbjct 1299316 CATAAACCACGCTCTCCAGCTGACTGGCCAAGAAGACGTTACTGAAACAGGATGCAATGC 1299257 Query 162830 CCATCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGAT 162889 ||||||| || | | || ||| | ||| | || || || | ||| || | || Sbjct 1299256 CCATCACCGCTGCTAAAAAGGAACTGTCTGATTTTTTGTCCACATGAATGCAATAGAAAT 1299197 Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949 ||||||| |||||||||||||| | || || | ||| || || || || || |||| Sbjct 1299196 TCTGAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCA 1299137 Query 162950 CGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 | ||||| || || || |||||||| ||||| || Sbjct 1299136 CTATAGAGTATGCAATTGGGAACTCCGCCTCTTC 1299103 >seq261757 Length=618156 Score = 221 bits (244), Expect = 1e-52 Identities = 614/934 (66%), Gaps = 21/934 (2%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||| | ||||||| |||| ||| || | ||||||||| || || |||| || Sbjct 5984 CCAGAGCTTTATGTCTTAGATGCTCATCCAAACACTGGACAGCAAAGGGGTCTATGTCAG 6043 Query 162119 CATCGAACTTGTTCGCGAACA---GGTGATG-CGAGTTCTTCAATATCCAATTAAGATCC 162174 || ||||| || || || | ||||||| || || ||||| || | || Sbjct 6044 TGTCAAACTTATTGGCAAAGAAGTGGTGATGACG-------CAGCATCCAGTTCAAGTCA 6096 Query 162175 CCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCC 162234 ||| ||||| ||||||||||| || || || || ||| |||| || || || |||| Sbjct 6097 CCCATCCCGAAAACGCACACGGAGCGTACATGGACCCCGTTGCAGGGTGGGTAGGGGGCA 6156 Query 162235 CCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATG 162294 || | | |||||| || || |||| |||||||| || ||||||| | ||||||||| Sbjct 6157 CCCTTGGACACATCGCCTTCAAAGTAGTGCCACTTGACAAACCTAGCCACCGCCTGCATG 6216 Query 162295 TCGGAGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTG 162353 || || |||| ||||| | || | || || || || || || | || | || || Sbjct 6217 TCAGACATGTCATACTT-TGGGCTCAAGGACAGCGCGCCGGGGACTTCTGGGATCCTTTG 6275 Query 162354 TAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTC 162413 | ||| ||||| || | ||| ||||| || || || || || | ||| || || |||| Sbjct 6276 AATAGTGGCCCAGAGATATTCATCTGGGCTGTATGTGTCTTTTGCCCATTCTATAAACTT 6335 Query 162414 CCTGACCGTTTTATCGTAT---AGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTA 162470 || |||| |||| || | || || ||| ||| | || | ||| || Sbjct 6336 TTGGA---TTTTTTCGTTCTCCAGCACATATCCCACATAGTCCCTACTGACTACAAAATA 6392 Query 162471 CGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCC-GTGT 162529 || || || ||||| | ||| | | ||||||| | ||||| || | ||| |||| Sbjct 6393 GGCACTGCCTGAAAAAATAGGTGTTTCAAGAGGAGGGCGTGCTTTG-CTGGTCCCCGTGT 6451 Query 162530 TGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAG 162589 || | | | || | | || | | | ||| |||||| || ||| ||| | Sbjct 6452 TGGTGAGCTTCCCATTAATAACTTCATAACGCTTTTTCCACCGATCCTCTTTATTGGAGG 6511 Query 162590 ACGGGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCT 162649 | | || || || || |||| ||| || | ||| |||| | || || | Sbjct 6512 GCATCTTCTCAGTTTCCAGGTTGTTTTCGCCCATCAGCGACTTGAGCTTCCTGACAATTT 6571 Query 162650 CTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAA 162709 | || ||||| |||| ||||| || | || || ||||| || | |||||||| | Sbjct 6572 CCAGGTTGGTTTTAATAGGAAAATCCATACCACAAAGATTGATCAAGTATTTCCAGTCTG 6631 Query 162710 CGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACG 162769 | || || | |||||| |||| | ||||| || || ||||| || || |||||||| | Sbjct 6632 CACTCAGGCTGTACAGGTCCTTCATGCAGTTGAGGTCCGCCTGAACCCGGCTCCACGAAG 6691 Query 162770 CGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCC 162829 | || || |||||||||| | | |||| | ||||| || |||||| || | || | Sbjct 6692 CATAAACCACGCTCTCCAGCTGACTGGCCAAGAAGACGTTACTGAAACAGGATGCAATGC 6751 Query 162830 CCATCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGAT 162889 ||||||| || | | || ||| | ||| | || || || | ||| || | || Sbjct 6752 CCATCACCGCTGCTAAAAAGGAACTGTCTGATTTTTTGTCCACATGAATGCAATAGAAAT 6811 Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949 ||||||| |||||||||||||| | || || | ||| || || || || || |||| Sbjct 6812 TCTGAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCA 6871 Query 162950 CGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 | ||||| || || || |||||||| ||||| || Sbjct 6872 CTATAGAGTATGCAATTGGGAACTCCGCCTCTTC 6905 >seq252022 Length=444942 Score = 219 bits (242), Expect = 5e-52 Identities = 248/331 (75%), Gaps = 1/331 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || |||| | | ||| || | ||||| ||||| || ||||| | | Sbjct 235453 CATAGAGAGTGAGGCAGGCTGTTCTCGAGATCTGCCCGGAACCAAAGGTGTTAAAGAGGC 235512 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | ||||||| |||||||||| |||||| ||||| || || | || || | | || Sbjct 235513 ACTTGTAACAGCCCTCGTCCTCCAGGGTGGTATTCCAGAAGGTGATGGTGGAGTCCCGGA 235572 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||||||| ||||||||| | ||||||||| || || || || | Sbjct 235573 GTCCCAGCTGGGTGATGTTCACCTTGTCCTTGTAGGAAGGCTGGACCACGACCCCATGGT 235632 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 | |||||| ||| ||||||| || |||||||||||||| || |||||||| || || | Sbjct 235633 CCCAGCTGAAGGTGACCATGTTCTCCGGGCTCGTAGCCTTGATTTTCTGCCATGTAACAA 235692 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | | ||||| | | ||||| ||||||||| |||| ||||||||||||| || | Sbjct 235693 TCAGGACTTCCTGGGAAGTTTGCAGAGAGCATTTTAAGGAAGCAGGTGTGTGCAGCAGCA 235752 Query 172071 CCCTTTCGTCTTGCGTTACCACCTGTCCCTG 172101 | |||| || || || |||| ||||||||| Sbjct 235753 CTTTTTCATCCTGGGTCACCA-CTGTCCCTG 235782 Score = 129 bits (142), Expect = 7e-25 Identities = 156/208 (75%), Gaps = 7/208 (3%) Strand=Plus/Plus Query 171521 GTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTA 171580 || |||| ||||| ||| | || ||||| |||||||||| | ||||||||||| || Sbjct 232976 GTCACAGACCCCAGGTGCAGCACCTTGCAGATCACCTCCT---TCCCCACTTGACTCTTG 233032 Query 171581 GGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGT-AGA-ACGG 171638 || ||||| || || || ||||| || || || || ||||| ||| | ||| ||| || Sbjct 233033 GGGTCTTTGACCTGGAGGATGCTGGTGACGGAAGTGGTCCCATTAGGGTGTGAGAGAC-- 233090 Query 171639 TTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTC 171698 | | ||||| || || || || || || || ||||||||| | || ||||| ||||| | Sbjct 233091 TCTCCGTACTGTTCTCAATCCCTGACCCAGCTACTTTCCAAGAGATCACAGGGGCTGGGC 233150 Query 171699 TAGCAGTAGCAGAGCAAGTTATGTTTAA 171726 ||||| ||||||||||| || ||||| Sbjct 233151 GGGCAGTGGCAGAGCAAGTGATATTTAA 233178 >seq256662 Length=553297 Score = 98.7 bits (108), Expect = 1e-15 Identities = 185/272 (68%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 162712 CTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCG 162771 || || | |||||| || | | ||||| || || ||||| || || |||||||| || Sbjct 195042 CTCAGGCTGTACAGGTCTTTCATGCAGTTGAGGTCTGCCTGAACCCGGCTCCACGAAGCA 194983 Query 162772 TACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCC 162831 || || | |||||||||| | || | |||||||| | |||||| | | || ||| Sbjct 194982 TAAACCAAGCTCTCCAACTGACTGTCCACAAAGACGTCACTGAAACAGGGTGCAATGCCC 194923 Query 162832 ATCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 ||| | || | | || ||| | ||| | || || || | ||| | | ||| Sbjct 194922 ATCGCTGCTGCTAAAAAGGAATTGTCTGATTTTTTGTCCACATGAATGCAATGGAAATTT 194863 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| |||||||||||||| | || || | ||| || || || || || ||||| Sbjct 194862 TGAGGCATCTAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACT 194803 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 |||| || || || |||||||| ||||| || Sbjct 194802 GTAGAGTATGCAATTGGGAACTCCGCCTCTTC 194771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576486415046400