Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq257400 122 2e-22 seq253961 95.1 3e-14 seq262210 84.2 5e-11 seq255454 84.2 5e-11 >seq257400 Length=867372 Score = 122 bits (134), Expect = 2e-22 Identities = 219/314 (70%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 ||||||||||| || ||||| || |||||||| || |||| | ||||| ||| Sbjct 654274 GTAGCTTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCCATCTTCTGG 654215 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 |||||||| || |||||||||||||| ||| |||| |||||| || | || |||||| Sbjct 654214 CTTAAGAAACGAGGATTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGAT 654155 Query 131984 GAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGC-TGATAAACTTGA 132042 || | || || ||| ||||| | || | | || | ||| | | |||| | Sbjct 654154 GAGGGTTTACACTGTGACTTTGCCTGCCTCATGT-TCAAACACCTGCTTCACAAACCTTC 654096 Query 132043 TGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTAC 132102 ||| | | | ||| || | || | | | || ||| || || ||||||| |||| Sbjct 654095 GGAACAGAGAGTAAAAGAAATAATTATCAATGCTGTTAGGATAGAACAGGAGTTCCTTAC 654036 Query 132103 AGAAGCTTTGCCTTGCAATTTGATTGGGATGAA-TGCTGACTCT-ATGAAGGAGTACATT 132160 || || |||||| ||| ||||||| ||||| ||| ||| | |||||| |||||||| Sbjct 654035 GGAGGCCTTGCCTGTCAAGCTGATTGGAATGAATTGC--ACTTTAATGAAGCAGTACATT 653978 Query 132161 GAATTCGTTGCTGA 132174 |||||||| || || Sbjct 653977 GAATTCGTGGCAGA 653964 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 ||||||||||| || ||||| || |||||||| || |||| | ||||| ||| Sbjct 657254 GTAGCTTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCCATCTTCTGG 657195 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 |||||||| || |||||||||||||| ||| |||| |||||| || | || |||||| Sbjct 657194 CTTAAGAAACGAGGATTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGAT 657135 Query 131984 GA 131985 || Sbjct 657134 GA 657133 >seq253961 Length=405542 Score = 95.1 bits (104), Expect = 3e-14 Identities = 215/316 (68%), Gaps = 7/316 (2%) Strand=Plus/Minus Query 131862 TTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTT 131921 ||||||| ||||| || ||||| || |||||||| ||| |||| | ||||| | Sbjct 310544 TTGTAGCCTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATCTTCT 310485 Query 131922 GGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAG 131981 |||| ||||| | |||||||||||||| ||| |||| |||||| || | || |||| Sbjct 310484 GGCTCAAGAAATGAGGATTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAG 310425 Query 131982 ATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGC-TGATAAACTT 132040 |||| | || || ||| ||||| | || | || || | ||| | | |||| | Sbjct 310424 ATGAGGGTTTACACTGTGACTTTGCCTGCCTCATGTTTA-AACACCTGCTTCACAAACCT 310366 Query 132041 GATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATT 132100 | || || | ||| || | || | | | || ||| || || ||| ||| || Sbjct 310365 -TCGGAAGGAAAGTAAAAGAAATAATTATCAATGCTGTTAGGATAGAACAGGCGTTCCTT 310307 Query 132101 ACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAA-TGCTGACTCT-ATGAAGGAGTACA 132158 | | || |||| | ||| |||| || ||||| ||| ||| | |||||| |||||| Sbjct 310306 ATGGGGGCCTTGCTTGTCAAGCTGATGGGAATGAATTGC--ACTTTAATGAAGCAGTACA 310249 Query 132159 TTGAATTCGTTGCTGA 132174 |||||||||| || || Sbjct 310248 TTGAATTCGTGGCAGA 310233 >seq262210 Length=2098626 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131862 TTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTT 131921 |||| || |||||| ||| || ||||| || || || || |||| |||||| || | Sbjct 1751739 TTGTGGCCTTTGCTGCTGTAGAGGGTATTTTTTTCTCGGGATCTTTTGCTGCTATATTCT 1751680 Query 131922 GGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAG 131981 || | |||||| | || | |||||||||||| | || |||||| || ||||| |||| Sbjct 1751679 GGTTAAAGAAGAGAGGTCTTATGCCTGGACTCACTTTTTCCAATGAACTCATCAGCAGAG 1751620 Query 131982 ATGAAG 131987 |||||| Sbjct 1751619 ATGAAG 1751614 >seq255454 Length=1551705 Score = 84.2 bits (92), Expect = 5e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 167210 AAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAATTCATT 167269 ||| |||||| | ||| || || | |||| | |||||||||||||| |||||| Sbjct 182761 AAATGAGCACATCAAAGTTTCATCCACACTCATCATTCCACCAGCATTATCAAATTCA-C 182819 Query 167270 CGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTCATAAC 167328 | || |||||||| |||||||||| || || |||| || || ||| |||||||| | Sbjct 182820 CACAGTAATTTGGGGCTGAAAATAGGGTTACCAATTGTCGCTTAGCAAAAAATTCATACC 182879 Query 167329 CATCTTCAACAAC 167341 |||||||||| || Sbjct 182880 CATCTTCAACTAC 182892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1182721098201724