Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq260417 116 2e-21 seq43725 104 2e-17 >seq260417 Length=1194950 Score = 116 bits (128), Expect = 2e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | |||| || || ||| ||| || || |||||||| ||||| Sbjct 431930 CCCCCTCTAAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 431871 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| ||||| | |||||| || | || Sbjct 431870 AGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGG 431811 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | ||| ||| |||||| || | ||||| Sbjct 431810 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CATTCTCAATGGTGTCACTGGGCTCCAC 431752 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| |||||||| ||||| ||||| |||||||||||||| || Sbjct 431751 CTCGAGGGTGATAGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCATTGT 431701 Score = 95.1 bits (104), Expect = 8e-15 Identities = 167/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || ||||| | ||| | |||| || || ||| |||||| || ||| Sbjct 432170 AAAATCTGCATTCCCCCTCTAAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATG 432111 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| ||||| || ||||| | || |||| || || |||||||| ||||| | |||| Sbjct 432110 TTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGC 432051 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC 33689 || || | || | ||||| ||||| || || || | ||| ||| |||||| Sbjct 432050 TGGTCAGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CATTCTCAATGGTGTC 431992 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || | ||||| || || || || | || || || ||||||||||| Sbjct 431991 ACTGGGCTCCACCTCGAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 431932 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || ||||| || | |||| || || ||| |||||| ||||||||||| ||||| Sbjct 432387 ACCGCCCCTCAAGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGTATGTTGTAGTCGGA 432328 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || |||||||| ||||| | |||||| || | || Sbjct 432327 CAGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGG 432268 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || | | |||| || | |||||| || | || | Sbjct 432267 GATGCCTTCCTTGTCTTGGATCTT-GGCCTTGACATTCTCAATGGTGTCACTGGGCTCTA 432209 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | || || || || |||||||| Sbjct 432208 CCTCGAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAAATCTGCAT 432160 >seq43725 Length=1898 Score = 104 bits (114), Expect = 2e-17 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 33528 TCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGT 33587 ||| | ||| | |||| || || ||| ||| || || |||||||| || || || || Sbjct 1343 TCTAAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 1284 Query 33588 GCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACC 33647 ||| | || |||| || || || ||||| ||||| | |||||| || | || | || Sbjct 1283 GCGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCC 1224 Query 33648 TTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAA 33706 || ||||| || || || | ||| ||| |||||| || | ||||| |||| Sbjct 1223 CTCCTTGTCTTGGATCTTGGCCTTGA-CATTCTCAGTGGTGTCACTGGGCTCCACCTCAA 1165 Query 33707 CCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 ||||| |||||||| ||||| ||||| |||||||||||||| || Sbjct 1164 GGGTGATAGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCATTGT 1119 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||| | | ||||| ||||| || || ||| |||||| || |||||||| ||||| Sbjct 1576 CCCCCTGTAAGACGTAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 1517 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || || || ||||| ||||| | |||||| || || Sbjct 1516 AGGGTGCGGCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAATCTCTGCTGGTCAGAGGGG 1457 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | ||| ||| |||||| || | || || Sbjct 1456 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CATTCTCAGTGGTGTCACTGGGCTCTAC 1398 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || || || || | || || |||||||||||||| Sbjct 1397 CTCGAGGGTAATGGTCTTCCCAGTCAGGGTCTTCACAAAGATCTGCAT 1350 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| ||||| || | |||| || || ||| |||||| || |||||||| || || Sbjct 1805 ACCACCCCTCAAGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 1746 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||| | |||| |||| || || |||||||| ||||| | |||||| || | || Sbjct 1745 CAGGGTGTGGCCGTCTTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGG 1686 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || || | | | ||| |||||| || | || | Sbjct 1685 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTCTCAGTGGTGTCACTGGGCTCTA 1627 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || | | || || || ||||||||||| Sbjct 1626 CCTCGAGGGTGATGGTCTTCCCGGACAGGGTCTTCACGAAGATCTGCAT 1578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327626027969280