Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq78631 132 1e-25 seq237447 131 4e-25 seq249408 127 5e-24 seq256153 118 2e-21 seq261730 114 3e-20 seq251325 114 3e-20 seq243700 105 2e-17 seq254768 98.7 2e-15 seq260417 91.5 3e-13 seq93685 89.7 1e-12 seq262164 84.2 5e-11 >seq78631 Length=346750 Score = 132 bits (146), Expect = 1e-25 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || |||||||| |||||| | || || ||| || || ||| | ||| Sbjct 179397 AAAACCCTGACGGGAAAAACCATCACTCTTGAGGTTGAACCCTCGGATACAATAGAAAAT 179338 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || || || ||||||||| || || || ||||| ||||| Sbjct 179337 GTGAAAGCCAA-GATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTT 179279 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||| ||||||||||| | |||||| | || |||||| | || || ||||| Sbjct 179278 TGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTC 179219 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 179218 CACTCTTCATCTTGTGTTGAGACTTCG 179192 Score = 95.1 bits (104), Expect = 3e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||| ||||| || || | || ||||||| |||||| Sbjct 179192 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 179251 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 | |||||||||||| ||||| || || ||||| || Sbjct 179252 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAG 179286 >seq237447 Length=29837 Score = 131 bits (144), Expect = 4e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || |||||||| || |||||| | || || ||| || | Sbjct 13235 CAGATTTTTGTAAAAACCCTGACAGGAAAGACCATCACTCTTGAGGTTGAACCCTCGGGT 13294 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| ||| || ||||| || ||| || || || ||||||||| || || || Sbjct 13295 ACAACAGAAAATGTGAAAGCCAA-GATCCAGGATAAGGAAGGAATTCATCCTGATCAGCA 13353 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||||| ||||| || |||||||| ||||||||||| | ||||| |||| |||||| | Sbjct 13354 GAGACTGATCTTTGCTGGAAAGCAACTGGAAGATGGACGTACTTTATCCGACTACAACAT 13413 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| |||||||| ||||| ||||||||||| Sbjct 13414 TCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCG 13452 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||| ||||| || || | || ||||| | ||||| Sbjct 13452 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGATAAAGTA 13393 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 | |||||||||||| |||||||| || ||||| || Sbjct 13392 CGTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAG 13358 >seq249408 Length=399222 Score = 127 bits (140), Expect = 5e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || |||||| | || || ||| || || ||| | ||| Sbjct 143820 AAAACCCTGACGGGAAAGACCATCACTCTTGAGGTTGAACCCTCGGATACAATAGAAAAT 143761 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || || || ||||||||| || || || ||||| ||||| Sbjct 143760 GTGAAAGCCAA-GATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTT 143702 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||| ||||||||||| | |||||| | || |||||| | || || ||||| Sbjct 143701 TGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTC 143642 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 143641 CACTCTTCATCTTGTGTTGAGACTTCG 143615 Score = 95.1 bits (104), Expect = 3e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||| ||||| || || | || ||||||| |||||| Sbjct 143615 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 143674 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 | |||||||||||| ||||| || || ||||| || Sbjct 143675 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAG 143709 >seq256153 Length=874984 Score = 118 bits (130), Expect = 2e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || |||||||| || |||||| | || | ||| || || ||| | ||| Sbjct 311875 AAAACCCTGACAGGAAAGACCATCACTCTTGAGGATGAACCCTCGGATACAATAGAAAAT 311816 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || || || ||| ||||| || | || ||||| ||||| Sbjct 311815 GTGAAAGCCAA-GATCCAGGATAAGGAAAGAATTCCTCCTGTTCAGCAGAGACTGATCTT 311757 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||| ||||||||||| | |||||| | || |||||| | || || ||||| Sbjct 311756 TGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTC 311697 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 311696 CACTCTTCATCTTGTGTTGAGACTTCG 311670 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||| ||||| || || | || ||||||| |||||| Sbjct 311670 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 311729 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGAA 204857 | |||||||||||| ||||| || || ||||| || | || |||| Sbjct 311730 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGAA 311775 >seq261730 Length=739691 Score = 114 bits (126), Expect = 3e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || |||||| | || || || || || ||| | ||| Sbjct 78542 AAAACCCTGACGGGAAAGACCATCACTCTTGAGGTTGATCCCTCGGATACAATAGAAAAT 78601 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || || || |||| |||| || || || ||||| ||||| Sbjct 78602 GTGAAAGCCAA-GATACAGGATAAGGAAGCAATTCCTCCTGATCAGCAGAGACTGATCTT 78660 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||| ||||||| ||| | |||||| | || |||||| | || || ||||| Sbjct 78661 TGCTGGCAAGCAACTGGAAGACGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTC 78720 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 78721 CACTCTTCATCTTGTGTTGAGACTTCG 78747 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||| ||||| || || | || ||||||| |||||| Sbjct 78747 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 78688 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 | ||| |||||||| ||||| || || ||||| || Sbjct 78687 CGTCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAG 78653 >seq251325 Length=352111 Score = 114 bits (126), Expect = 3e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 206197 GGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAG 206256 ||||| || |||||| | || || ||| || || ||| | ||| ||||| ||| Sbjct 311277 GGAAAGACCATCACTCTTGAGGTTGAATCCTCAGATACAATAGAAAATGTAAAAGCCAAG 311218 Query 206257 ATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAG 206316 || | | |||||||||||| || || || ||||| ||||| || || ||||| Sbjct 311217 ATCCGGAATAAAGAAGGAATTCCTCCTGATCAACAGAGACTGATCTTTGCTGGCAAGCAA 311158 Query 206317 TTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTT 206376 ||||||||||| | |||||| | || |||||| | || || |||||||||||||| || Sbjct 311157 CTGGAAGATGGATGTACTTTGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCATATT 311098 Query 206377 GTTTTGAGACTTC 206389 || |||||||||| Sbjct 311097 GTGTTGAGACTTC 311085 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| |||| |||||||||||||| || || | || ||||||| |||||| | Sbjct 311085 GAAGTCTCAACACAATATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAC 311144 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||| ||||| || || ||||| || | |||||| Sbjct 311145 ATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGA 311188 >seq243700 Length=14829 Score = 105 bits (116), Expect = 2e-17 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||| | | || ||| | || || ||| || || ||| | ||| Sbjct 8686 AAAACCCTGACGGGACAGATCATGACTCTTGAGGTTGAACCCTCGGATACAATAGAAAAT 8745 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || || || ||||||||| || || || ||||| ||||| Sbjct 8746 GTGAAAGCCAA-GATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTT 8804 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || ||||||||||||| |||||| || |||||| | || || ||||| Sbjct 8805 TGCTGGCAAACAACTGGAAGATGGAAGTACTTTGTGTGACTACAACATTCAAAAGGAGTC 8864 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||| ||||| ||||||||||| Sbjct 8865 CACTCTTCTTCTTGTGTTGAGACTTCG 8891 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| ||||||| ||||| || || | || |||||| |||||| Sbjct 8891 CGAAGTCTCAACACAAGAAGAAGAGTGGACTCCTTTTGAATGTTGTAGTCACACAAAGTA 8832 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 |||||||||||||| || || || || ||||| || Sbjct 8831 CTTCCATCTTCCAGTTGTTTGCCAGCAAAGATCAG 8797 >seq254768 Length=650996 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| |||| Sbjct 218186 AAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAAC 218127 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || ||| || || ||||||||| Sbjct 218126 GTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCTGACCAGCAGAGGCTTATCTTC 218067 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| ||||| | ||| || | ||||||||| ||||||||||||| Sbjct 218066 GCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCTGATTACAACATCCAGAAAGAGTCC 218007 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 218006 ACCCTGCACCTGGT 217993 >seq260417 Length=1194950 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||| || || ||| || ||| | ||||| ||||| ||| Sbjct 432016 AAGATCCAAGACAAGGAAGGCATCCCCCCTGACCAGCAGAGATTGATCTTTGCCGGGAAG 432075 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || |||| |||||| ||||||||||||| || || ||| Sbjct 432076 CAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTGCAC 432135 Query 206374 CTTGTTTTGAGACTTCGA 206391 || || || | ||| || Sbjct 432136 CTGGTCCTGCGTCTTAGA 432153 >seq93685 Length=1386 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| || || |||||| |||| Sbjct 786 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTAGAGCCCAGTGACACCATCGAGAAC 727 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || ||| || || || |||||| Sbjct 726 GTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCTGACCAGCAGAGGCTCATCTTC 667 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| ||||| | ||| || | ||||||||| ||||||||||||| Sbjct 666 GCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCTGATTACAACATCCAGAAAGAGTCC 607 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 606 ACCCTGCACCTGGT 593 >seq262164 Length=887232 Score = 84.2 bits (92), Expect = 5e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || |||| |||| || || || ||||| ||||| || || ||| Sbjct 793222 AAGATCCAGGATAAGGAAGAAATTCCTCCCGATCAGCAGAGACTGATCTTTGCTGGCAAG 793281 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| | |||||| | || |||||| | || || ||||| | ||||| Sbjct 793282 CAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCATGCTTCAT 793341 Query 206374 CTTGTTTTGAGACTTC 206389 ||||| ||| ||||| Sbjct 793342 CTTGTGTTGCCACTTC 793357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177746308814364