Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq78631 107 2e-18 seq249408 102 8e-17 seq243700 102 8e-17 seq251325 96.9 3e-15 seq261730 89.7 5e-13 seq260417 89.7 5e-13 seq256153 89.7 5e-13 seq237447 84.2 2e-11 seq259988 82.4 7e-11 >seq78631 Length=346750 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || ||||| |||||| || || || || | | Sbjct 179219 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 179278 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| ||||| || ||||| ||||| || || ||||| Sbjct 179279 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTCACA 179338 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || || || | || | ||||| || ||||| |||||| Sbjct 179339 TTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGTTTTTCCCGTCAGGGTTTTT 179398 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 179399 ACGAAAATCTGCAT 179412 >seq249408 Length=399222 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || ||||| |||||| || || || || | | Sbjct 143642 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 143701 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| ||||| || ||||| ||||| || || ||||| Sbjct 143702 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTCACA 143761 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || || || | || | || || || ||||| |||||| Sbjct 143762 TTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGTCTTTCCCGTCAGGGTTTTT 143821 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 143822 ACGAAAATCTGCAT 143835 >seq243700 Length=14829 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| | || |||| |||||| || ||||| || | | Sbjct 8864 GACTCCTTTTGAATGTTGTAGTCACACAAAGTACTTCCATCTTCCAGTTGTTTGCCAGCA 8805 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| ||||| || ||||| ||||| || || ||||| Sbjct 8804 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTCACA 8745 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || || || | |||| | | || ||||| |||||| Sbjct 8744 TTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTCATGATCTGTCCCGTCAGGGTTTTT 8685 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 8684 ACGAAAATCTGCAT 8671 >seq251325 Length=352111 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || |||| |||||| || || || || | | Sbjct 311111 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCA 311170 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTAT--CGGTAATTTTTTGTTTCA 132047 |||| || | ||||||||| ||||| || |||||||||| ||| || || ||| | Sbjct 311171 AAGATCAGTCTCTGTTGATCAGGAGGAATTCCTTCTTTATTCCGG--ATCTTGGCTTTTA 311228 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | ||| | ||||| | | || || || | || | || || || || |||||| Sbjct 311229 CATTTTCTATTGTATCTGAGGATTCAACCTCAAGAGTGATGGTCTTTCCCATCGGAGTTT 311288 Query 132108 TTATGAAAATCTGCAT 132123 |||||||||||||||| Sbjct 311289 TTATGAAAATCTGCAT 311304 >seq261730 Length=739691 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || ||||| ||||| || || || || | | Sbjct 78720 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCGTCTTCCAGTTGCTTGCCAGCA 78661 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| ||||| || |||| ||||| || || ||||| Sbjct 78660 AAGATCAGTCTCTGCTGATCAGGAGGAATTGCTTCCTTATCCTGTATCTTGGCTTTCACA 78601 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || || || | || | || || || ||||| |||||| Sbjct 78600 TTTTCTATTGTATCCGAGGGATCAACCTCAAGAGTGATGGTCTTTCCCGTCAGGGTTTTT 78541 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||| || Sbjct 78540 ACGAAAATCTGTAT 78527 >seq260417 Length=1194950 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| |||| || | | | |||||||| || |||||||||||| || ||| || Sbjct 432378 CAAGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGTATGTTGTAGTCGGACAGGGTGCG 432319 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||| || ||||| || |||| | |||| | | ||| || || || || |||||||| Sbjct 432318 GCCATCCTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCTTC 432259 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || || || | | || | || || | ||||| || |||| || Sbjct 432258 CTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGT 432199 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || |||||||| || || | |||||||||||| Sbjct 432198 GATGGTCTTCCCAGTCAGGGTCTTCACGAAAATCTGCAT 432160 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| || | | | |||||||| || |||||||||||| || ||| || | Sbjct 432146 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 432087 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| | |||| | | ||| || || || || |||||||| || Sbjct 432086 TCTTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCTTCCTTG 432027 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | || | || || | |||||||| |||| || | Sbjct 432026 TCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATG 431967 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| || || | ||| |||||||| Sbjct 431966 GTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 431932 >seq256153 Length=874984 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || ||||| |||||| || || || || | | Sbjct 311697 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 311756 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||| | ||||| || | ||| ||||| || || ||||| Sbjct 311757 AAGATCAGTCTCTGCTGAACAGGAGGAATTCTTTCCTTATCCTGGATCTTGGCTTTCACA 311816 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || | || | || | || || || ||||| |||||| Sbjct 311817 TTTTCTATTGTATCCGAGGGTTCATCCTCAAGAGTGATGGTCTTTCCTGTCAGGGTTTTT 311876 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 311877 ACGAAAATCTGCAT 311890 >seq237447 Length=29837 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||||||||||||| | ||||| |||||| || || || || | | Sbjct 13425 GACTCCTTTTGAATGTTGTAGTCGGATAAAGTACGTCCATCTTCCAGTTGCTTTCCAGCA 13366 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| ||| | || ||||| ||||| || || ||||| Sbjct 13365 AAGATCAGTCTCTGCTGATCAGGATGAATTCCTTCCTTATCCTGGATCTTGGCTTTCACA 13306 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| ||| | | || || || || | || | || || || ||||| |||||| Sbjct 13305 TTTTCTGTTGTACCCGAGGGTTCAACCTCAAGAGTGATGGTCTTTCCTGTCAGGGTTTTT 13246 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 13245 ACAAAAATCTGCAT 13232 >seq259988 Length=219189 Score = 82.4 bits (90), Expect = 7e-11 Identities = 136/194 (70%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||||| |||||| || ||||| |||||| || || || || | | Sbjct 215973 GACTCCTTTTGAATGTGGTAGTCAGACAAGGTACATACATCTTCCAGTTGCTTTCCAGCA 215914 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| ||||| ||||| || ||||| | ||| || || ||||| Sbjct 215913 AAGATCAT-CTCTGCTGATCAGGAGGAATTCCTTCCTAATCCTGGATCTTGGCTTTCACA 215855 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || || || | | | ||||| || ||| | |||||| Sbjct 215854 TTTTCTATTGTATCCGAGGGTTCAACCTCAAGAG--ATTGTTTTCCCTGTCGGGGTTTTT 215797 Query 132110 ATGAAAATCTGCAT 132123 |||||||||||||| Sbjct 215796 ATGAAAATCTGCAT 215783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475008094398240