Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq262323 107 6e-20 seq259902 100 9e-18 seq260417 98.7 3e-17 seq260315 98.7 3e-17 seq258531 98.7 3e-17 seq261686 86.0 2e-13 seq260137 84.2 7e-13 >seq262323 Length=679592 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 369002 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 369061 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 369062 TCCCGGGTTTCGGC 369075 Score = 105 bits (116), Expect = 2e-19 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 472328 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 472269 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 472268 CCCGGGTTTCGGC 472256 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 570089 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 570148 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 570149 CCCGGGTTTCGGC 570161 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 376950 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 377009 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 377010 CCGGGTTTCGGC 377021 Score = 80.6 bits (88), Expect = 8e-12 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||| |||||||| ||||||||||||| || ||||||| ||||||| | Sbjct 554813 GCTGAAATAGCTCAGCAGGGAGAGCGTTAGACTGAAGATGTAGAGGTCCCGGGTTCAATC 554872 Query 2829 CCGGGCTTCAGC 2840 |||| ||| || Sbjct 554873 TCGGGTTTCGGC 554884 >seq259902 Length=51641 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 18895 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 18954 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 18955 CCCGGGTTTCGGC 18967 >seq260417 Length=1194950 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 416366 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 416425 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 416426 CCGGGTTTCGGC 416437 >seq260315 Length=63875 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 34018 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 33959 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 33958 CCGGGTTTCGGC 33947 >seq258531 Length=122760 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 46316 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 46257 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 46256 CCGGGTTTCGGC 46245 >seq261686 Length=368935 Score = 86.0 bits (94), Expect = 2e-13 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||| || || ||| | | Sbjct 296354 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGGCCTTGTTTCGATC 296295 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 296294 CCGGGTTTCGGC 296283 >seq260137 Length=688262 Score = 84.2 bits (92), Expect = 7e-13 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 2770 CTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCC 2829 || ||||||||||||||||||||| ||||||| ||||||||||||| |||||||| | || Sbjct 130779 CTAAAGTAGCTCAGTTGGGAGAGCCTTAGACTAAAGATCTAAAGGTTCCTGGTTCCATCC 130838 Query 2830 C 2830 | Sbjct 130839 C 130839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15802952943180