Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq261394 89.7 4e-13 seq205975 82.4 6e-11 >seq261394 Length=468452 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || ||||||||||| |||||||| ||||| || || || || ||||| || |||||| Sbjct 93281 CCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAAGGCACA 93340 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAG 111881 || |||||||| || ||||| | ||| || |||||||| || || Sbjct 93341 CCCAGGCCCATGTCCCCCGACCGTTGGTACAGCTGACACGAGAG 93384 >seq205975 Length=138355 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 112177 ATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAACCATAGC 112236 || ||||||||||| || || | ||| | |||||||| ||||| | |||||||| ||| Sbjct 51927 ATTTTCACTCCTTTGGAAGAGAGGTCTTTAGCATTTGTAGATCCCTTGATAAACCACAGC 51868 Query 112237 AATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAA 112289 || || |||| ||| || |||||| | || | ||| || | ||||| ||||| Sbjct 51867 AACTCCTCCAAAACACCCTTCCAGAATACACGTTTGGTGATCAGCAGAGGAAA 51815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 390660229592692