Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq262289 95.1 1e-14 seq184951 91.5 2e-13 seq253961 86.0 7e-12 seq262210 84.2 2e-11 seq252796 82.4 8e-11 >seq262289 Length=1567532 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| ||||| || ||||| || Sbjct 768764 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAATTGA 768705 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| |||||||| | || ||| ||||| ||||||||||||||||| | | Sbjct 768704 CCAATGGGCTGCAGGAGGTTCACATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 768645 Query 152149 ATCGT 152153 || || Sbjct 768644 ATGGT 768640 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| ||||||||||||| || | ||||| ||||| Sbjct 768764 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAATTGA 768705 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| || |||||||| || ||| |||||||| || |||||||| |||| | Sbjct 768704 CCAATGGGCTGCAGGAGGTTCACATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 768645 Query 117425 ATCGT 117429 || || Sbjct 768644 ATGGT 768640 >seq184951 Length=115754 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||||||||||| ||||||||| ||| || || || || || Sbjct 67124 GTGAAAATATAACGAGGACTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 67183 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | ||||| ||||||||||| |||||||| || ||| Sbjct 67184 CCAATAGGCTGAAGCAAGTTAATATTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 67243 Query 117425 ATCGT 117429 || || Sbjct 67244 ATAGT 67248 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | || || ||||| |||||||| ||||| ||||||||||| Sbjct 67124 GTGAAAATATAACGAGGACTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 67183 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | ||||| ||||| || |||||||||||||||||| Sbjct 67184 CCAATAGGCTGAAGCAAGTTAATATTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 67243 Query 152149 ATCGT 152153 || || Sbjct 67244 ATAGT 67248 >seq253961 Length=405542 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||||||| || | |||||| ||||| | ||||||||||| | ||| | ||| Sbjct 310418 CCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAATCCTCATTTC 310477 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| ||||||| || |||||| |||||||| ||||| || |||||| Sbjct 310478 TTGAGCCAGAAGATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAG 310537 Query 74889 GCGACAA 74895 || |||| Sbjct 310538 GCTACAA 310544 >seq262210 Length=2098626 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829 ||||||||||||| || | |||||| ||||| | || ||||||||||| || | ||||| Sbjct 1751614 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 1751673 Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889 | ||||| || || ||| || || || ||| || || || || ||| ||||||| Sbjct 1751674 TTAACCAGAATATAGCAGCAAAAGATCCCGAGAAAAAAATACCCTCTACAGCAGCAAAGG 1751733 Query 74890 CGACAA 74895 | |||| Sbjct 1751734 CCACAA 1751739 >seq252796 Length=435546 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/114 (76%), Gaps = 7/114 (6%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||||||| || |||||| | ||||| | ||||||||||| |||||||| ||| Sbjct 281526 CCCTCATCTCTGCTAATAAATTCACTGGAAAATGTGAGGCCAGGCATCAGTCCACGTTTC 281585 Query 74829 TTCAACCAAAAG----ATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGAC 74878 || | ||| ||| |||||| || |||||| ||| |||| ||||| || Sbjct 281586 TTGAGCCAGAAGATCAATGGCA---AAAGAACCAGAAAAGGAGATCCCTTCTAC 281636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545375411623200