Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq260357 100 3e-16 seq259686 98.7 1e-15 seq250175 98.7 1e-15 seq252703 93.3 5e-14 seq241122 89.7 6e-13 seq80414 87.8 2e-12 seq39485 84.2 3e-11 seq263927 82.4 9e-11 >seq260357 Length=355543 Score = 100 bits (110), Expect = 3e-16 Identities = 184/270 (68%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 22664 TTCAAATATAAGTTGTGCTACTCTATCGCCCTTATTTACGTAAAATACATCCTTACTAAA 22723 |||| | || || ||||| | || ||| ||||| || || | ||| || | | ||| Sbjct 322414 TTCACAAATCAGCTGTGCAATTCAATCACCCTTTTTCACTTCAAACTTTTCTGTGCCAAA 322355 Query 22724 ATTAAATAACAATATACCTATATTTCCCCTGTAATCTCTATCTATCACACCCGCGCCTAC 22783 ||||||||||| | ||| | |||||| || || ||| |||||| ||||| || ||||| Sbjct 322354 ATTAAATAACACAACACCAACATTTCCTCTATAGTCTTCATCTATGACACCAGCTCCTAC 322295 Query 22784 ATCGATAAAATGATTACATGCCAATCCCGATCTAGGAGATATTCTTCCATATAATCCTTC 22843 ||| || || || || ||||| || || | |||| || ||||||||| |||| Sbjct 322294 ATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGCTACTCTTCCATAACATCCAGA 322235 Query 22844 CGGTATATCTATTATAATATCAGTCATTACTAATTGTTTACCCATAGGTTCTATTACGTA 22903 || | |||| ||| || || | || | ||| ||||| ||| || | || Sbjct 322234 AGGAAGGGCTATCTGAATGTCTGTTTTCACAAGGGCTTTCCCCATGGGTGGTACTGTATA 322175 Query 22904 ATTATACGCGCTATATAGATCATATCCTGC 22933 || ||| || || || || ||||| ||||| Sbjct 322174 ATCATAGGCACTGTACAGGTCATAGCCTGC 322145 >seq259686 Length=587844 Score = 98.7 bits (108), Expect = 1e-15 Identities = 201/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 ||||| ||||||||||| || |||| | || || ||||| | || ||| ||| Sbjct 439168 ACTTCCTCTATTTCTGGATAAAAAATGCGTTCACAAATCAGCTGTGCAATTCGATCACCC 439227 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || || || | ||| || | | |||||||||||||| | ||| | |||||| || Sbjct 439228 TTTTTCACTTCAAACTTTTCTGTGCCAAAATTAAATAACACAACACCAACATTTCCTCTA 439287 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 || ||| |||||| ||||| || |||||||| || || || || ||||| || || Sbjct 439288 TAGTCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAA 439347 Query 22815 CTAGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATTATAATATCAGTCATTACT 22874 | |||| || ||||||||| |||| || | |||| ||| || || | || Sbjct 439348 CATGGAGCTACTCTTCCATAACATCCAGAAGGAAGGGCTATCTGAATGTCTGTTTTCACA 439407 Query 22875 AATTGTTTACCCATAGGTTCTATTACGTAATTATACGCGCTATATAGATCATATCCTGC 22933 | ||| |||| ||| || | |||| ||| || || || || ||||| ||||| Sbjct 439408 AGGGCTTTCTCCATGGGTGGTACTGTATAATCATAGGCACTGTACAGGTCATAGCCTGC 439466 >seq250175 Length=443462 Score = 98.7 bits (108), Expect = 1e-15 Identities = 201/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 ||||| ||||||||||| || |||| | || || ||||| | || ||| ||| Sbjct 398232 ACTTCCTCTATTTCTGGATAAAAAATGCATTCACAAATCAGCTGTGCAATTCGATCACCC 398173 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || || || | ||| || | | |||||||||||||| | ||| | |||||| || Sbjct 398172 TTTTTCACTTCAAACTTTTCTGTGCCAAAATTAAATAACACAACACCAACATTTCCTCTA 398113 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 || ||| |||||| ||||| || |||||||| || || || || ||||| || || Sbjct 398112 TAGTCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAA 398053 Query 22815 CTAGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATTATAATATCAGTCATTACT 22874 | |||| || ||||||||| |||| || | |||| ||| || || | || Sbjct 398052 CGTGGAGCTACTCTTCCATAACATCCAGAAGGAAGGGCTATCTGAATGTCTGTTTTCACA 397993 Query 22875 AATTGTTTACCCATAGGTTCTATTACGTAATTATACGCGCTATATAGATCATATCCTGC 22933 | ||| ||||| ||| || | |||| ||| || || || || |||| ||||| Sbjct 397992 AGGGCTTTCCCCATGGGTGGTACTGTATAATCATAGGCACTGTACAGGCCATAGCCTGC 397934 >seq252703 Length=225757 Score = 93.3 bits (102), Expect = 5e-14 Identities = 200/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 ||||| ||||||||||| || |||| | || || ||||| | || ||| ||| Sbjct 208611 ACTTCCTCTATTTCTGGATAAAAAATGCGTTCACAAATCAGCTGTGCAATTCGATCACCC 208552 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 | || || | ||| || | | |||||||||||||| | ||| | |||||| || Sbjct 208551 TCTTTCACTTCAAACTTTTCTGTGCCAAAATTAAATAACACAACACCAACATTTCCTCTA 208492 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 || ||| |||||| ||||| || |||||||| || || || || ||||| || || Sbjct 208491 TAGTCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAA 208432 Query 22815 CTAGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATTATAATATCAGTCATTACT 22874 | |||| || ||||| ||| |||| || | |||| ||| || || | || Sbjct 208431 CGTGGAGCTACTCTTCTATAACATCCAGAAGGAAGGGCTATCTGAATGTCTGTTTTCACA 208372 Query 22875 AATTGTTTACCCATAGGTTCTATTACGTAATTATACGCGCTATATAGATCATATCCTGC 22933 | ||| ||||| ||| || | |||| ||| || || || || ||||| ||||| Sbjct 208371 AGGGCTTTCCCCATGGGTGGTACTGTATAATCATAGGCACTGTACAGGTCATAGCCTGC 208313 >seq241122 Length=19232 Score = 89.7 bits (98), Expect = 6e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 22664 TTCAAATATAAGTTGTGCTACTCTATCGCCCTTATTTACGTAAAATACATCCTTACTAAA 22723 |||| | || || ||||| | || ||| ||||| || || | ||| || | | ||| Sbjct 2620 TTCATAAATCAGCTGTGCAATTCGATCACCCTTTTTCACTTCAAACTTTTCTGTGCCAAA 2679 Query 22724 ATTAAATAACAATATACCTATATTTCCCCTGTAATCTCTATCTATCACACCCGCGCCTAC 22783 ||||||||||| | ||| | |||||| || || ||| |||||| ||||| || ||||| Sbjct 2680 ATTAAATAACACAACACCAACATTTCCTCTATAGTCTTCATCTATGACACCAGCTCCTAC 2739 Query 22784 ATCGATAAAATGATTACATGCCAATCCCGATCTAGGAGATATTCTTCCATATAATCC 22840 ||| || ||||| || ||||| || || |||| || ||||| ||| |||| Sbjct 2740 ATCTATGAAATGTTTTGCAGCCAAGCCAGAAAGTGGAGCTACTCTTCAATAACATCC 2796 >seq80414 Length=59647 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 ||||| ||||||||||| || |||| | || || ||||| | || ||| ||| Sbjct 2784 ACTTCCTCTATTTCTGGATAAAAAATGCGTTCACAAATCAGCTGTGCAATTCGATCTCCC 2843 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || || || | ||| || | | ||||| |||||||| | || | |||||| || Sbjct 2844 TTTTTCACTTCAAACTTTTCTGTGCCAAAATCAAATAACACAACACTAACATTTCCTCTA 2903 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 || ||| |||||| ||||| || |||||||| || || || || ||||| || || Sbjct 2904 TAGTCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCGGAA 2963 Query 22815 CTAGGAGATATTCTTCCATATAATCC 22840 | |||| || ||||||||| |||| Sbjct 2964 CATGGAGCTACTCTTCCATAACATCC 2989 >seq39485 Length=23403 Score = 84.2 bits (92), Expect = 3e-11 Identities = 198/299 (66%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 ||||| ||||||||||| || | |||| | || || ||||| | || ||| ||| Sbjct 18163 ACTTCCTCTATTTCTGGATAAAAAATGTGTTCACAAATCAGCTGTGCAATTCGATCACCC 18222 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || | || | ||| || | | |||||||||||||| | ||| | |||||| || Sbjct 18223 TTTTGCACTTCAAACTTTTCTGTGCCAAAATTAAATAACACAACACCAACATTTCCTCTA 18282 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 || ||| || ||| ||||| |||||||| || || || || ||||| || || Sbjct 18283 TAGTCTTCATTTATGACACCACTTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAA 18342 Query 22815 CTAGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATTATAATATCAGTCATTACT 22874 | |||| || ||||||||| |||| || | |||| ||| || | | || Sbjct 18343 CGTGGAGCTACTCTTCCATAACATCCAGAAGGAAGGGCTATCTGAATGTCTATTTTCACA 18402 Query 22875 AATTGTTTACCCATAGGTTCTATTACGTAATTATACGCGCTATATAGATCATATCCTGC 22933 | ||| ||||| ||| || | |||| ||| || || || || ||||| ||||| Sbjct 18403 AGGGCTTTCCCCATGGGTGGTACTGTATAATCATAGGCACTGTACAGGTCATAGCCTGC 18461 >seq263927 Length=651112 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 32832 GCATTTTTTGGAGCACAGATAAATTCTTTTATACATGTTATAATGTATAGTTATTACGGA 32891 |||||||||||||| ||||| ||||||||||||||||| || ||||| || || || Sbjct 446268 GCATTTTTTGGAGCCCAGATTAATTCTTTTATACATGTGATTATGTACTCATACTATGGG 446209 Query 32892 TTAACAGCAATAGGTCCTTCCTTGCGAAAATATCTATGGTGGAAA 32936 ||||| ||| | || || | | | || ||||| ||||||||| Sbjct 446208 TTAACTGCATTTGGCCCATGGATTCAGAAGTATCTCTGGTGGAAA 446164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 601151971220160