Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq260417 129 4e-25 seq43725 120 2e-22 seq78631 87.8 1e-12 seq249408 84.2 1e-11 >seq260417 Length=1194950 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||||||||||| |||| || || ||| |||||| || ||||| || || || Sbjct 431930 CCCCCTCTAAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 431871 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || |||||||| || || | ||| ||||| || || Sbjct 431870 AGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGG 431811 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||| || | || || | ||| ||||| | |||||| Sbjct 431810 ATGCCTTCCTTGTCTTGGATC-TTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 431752 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || |||||||| ||||| ||||||||||| |||||||| Sbjct 431751 CTCGAGGGTGATAGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCAT 431704 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||||||||||| |||| || || ||| ||| || || ||||| || || || Sbjct 432158 CCCCCTCTAAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 432099 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || |||||||| || || | ||| ||||| || || Sbjct 432098 AGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGGGGG 432039 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||| || | || || | ||| ||||| | |||||| Sbjct 432038 ATGCCTTCCTTGTCTTGGATC-TTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 431980 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || | || ||||| || |||||||| Sbjct 431979 CTCGAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 431932 >seq43725 Length=1898 Score = 120 bits (132), Expect = 2e-22 Identities = 162/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 34485 TCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGT 34544 ||||||||||| |||| || || ||| |||||| || ||||| || || || || || Sbjct 1343 TCTAAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 1284 Query 34545 TCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCC 34604 || | ||||| || || || || ||||| || || | ||| ||||| || || | || Sbjct 1283 GCGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCC 1224 Query 34605 CTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCA 34663 |||||||||| |||| || | || || | | | ||||| | |||||| || | Sbjct 1223 CTCCTTGTCTTGGATC-TTGGCCTTGACATTCTCAGTGGTGTCACTGGGCTCCACCTCAA 1165 Query 34664 CGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || |||||||| ||||| ||||||||||| |||||||| Sbjct 1164 GGGTGATAGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCAT 1122 >seq78631 Length=346750 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | |||||| | ||| |||||| ||||||||||||||| || || || Sbjct 179186 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 179245 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| ||||| || || ||||| || | | ||| || || || || Sbjct 179246 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 179305 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| ||||| || |||||| ||| | | ||||| || | || || Sbjct 179306 ATTCCTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACC 179365 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | || || ||||| || || | ||||| || ||||||||||| ||| Sbjct 179366 TCAAGAGTGATGGTTTTTCCCGTCAGGGTTTTTACGAAAATCTGCATCTTG 179416 >seq249408 Length=399222 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | |||||| | ||| |||||| ||||||||||||||| || || || Sbjct 143609 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 143668 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| ||||| || || ||||| || | | ||| || || || || Sbjct 143669 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 143728 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| ||||| || |||||| ||| | | ||||| || | || || Sbjct 143729 ATTCCTTCCTTATCCTGGATCTTGGCTTTCACATTTTCTATTGTATCCGAGGGTTCAACC 143788 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | || || || || || || | ||||| || ||||||||||| ||| Sbjct 143789 TCAAGAGTGATGGTCTTTCCCGTCAGGGTTTTTACGAAAATCTGCATTTTG 143839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313697456472572