Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq249408 113 4e-20 seq78631 107 2e-18 seq261730 104 2e-17 seq237447 104 2e-17 seq251325 100 2e-16 seq243700 98.7 9e-16 seq256153 96.9 3e-15 seq254768 93.3 4e-14 seq93685 93.3 4e-14 >seq249408 Length=399222 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || |||||||| ||||| || ||| | || |||||||| || ||||| || Sbjct 143835 ATGCAGATTTTCGTAAAAACCCTGACGGGAAAGACCATCACTCTTGAGGTTGAACCCTCG 143776 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| || || || || || ||||| || || || ||||| Sbjct 143775 GATACAATAGAAAATGTGAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 143716 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| ||| ||||||| | || | || || |||||| Sbjct 143715 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 143656 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| || | ||| | || ||| | | || ||||| Sbjct 143655 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 143609 >seq78631 Length=346750 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || |||||||| ||||| || || | || |||||||| || ||||| || Sbjct 179412 ATGCAGATTTTCGTAAAAACCCTGACGGGAAAAACCATCACTCTTGAGGTTGAACCCTCG 179353 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| || || || || || ||||| || || || ||||| Sbjct 179352 GATACAATAGAAAATGTGAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 179293 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| ||| ||||||| | || | || || |||||| Sbjct 179292 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 179233 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| || | ||| | || ||| | | || ||||| Sbjct 179232 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 179186 >seq261730 Length=739691 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 || ||||| || |||||||| ||||| || ||| | || |||||||| || || || || Sbjct 78527 ATACAGATTTTCGTAAAAACCCTGACGGGAAAGACCATCACTCTTGAGGTTGATCCCTCG 78586 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| || || || || || |||| || || || ||||| Sbjct 78587 GATACAATAGAAAATGTGAAAGCCAAGATACAGGATAAGGAAGCAATTCCTCCTGATCAG 78646 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| ||| |||||||| | || | || || |||||| Sbjct 78647 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGACGGACGTACTTTGTCTGACTACAAC 78706 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| || | ||| | || ||| | | || ||||| Sbjct 78707 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 78753 >seq237447 Length=29837 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| ||||| || ||| | || |||||||| || ||||| || Sbjct 13232 ATGCAGATTTTTGTAAAAACCCTGACAGGAAAGACCATCACTCTTGAGGTTGAACCCTCG 13291 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 | | | || | || ||| || || || || || ||||| || | || ||||| Sbjct 13292 GGTACAACAGAAAATGTGAAAGCCAAGATCCAGGATAAGGAAGGAATTCATCCTGATCAG 13351 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || ||| ||||||| | || | ||||| |||||| Sbjct 13352 CAGAGACTGATCTTTGCTGGAAAGCAACTGGAAGATGGACGTACTTTATCCGACTACAAC 13411 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| || | ||| | || ||| | | || ||||| Sbjct 13412 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 13458 >seq251325 Length=352111 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||||||| || || ||| | || |||||||| || ||| | || Sbjct 311304 ATGCAGATTTTCATAAAAACTCCGATGGGAAAGACCATCACTCTTGAGGTTGAATCCTCA 311245 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| || || | | |||||||| || || || |||||| Sbjct 311244 GATACAATAGAAAATGTAAAAGCCAAGATCCGGAATAAAGAAGGAATTCCTCCTGATCAA 311185 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| ||| ||||||| | | || | || || |||||| Sbjct 311184 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAAC 311125 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||||||||| || | ||| | || ||| Sbjct 311124 ATTCAAAAGGAGTCTACTCTTCATATTGTGTTG 311092 >seq243700 Length=14829 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || |||||||| ||||| || || || |||||||| || ||||| || Sbjct 8671 ATGCAGATTTTCGTAAAAACCCTGACGGGACAGATCATGACTCTTGAGGTTGAACCCTCG 8730 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| || || || || || ||||| || || || ||||| Sbjct 8731 GATACAATAGAAAATGTGAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 8790 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||||||| ||||||| | || | | || |||||| Sbjct 8791 CAGAGACTGATCTTTGCTGGCAAACAACTGGAAGATGGAAGTACTTTGTGTGACTACAAC 8850 Query 27168 ATTCAAAAGGAGTCGAC 27184 |||||||||||||| || Sbjct 8851 ATTCAAAAGGAGTCCAC 8867 >seq256153 Length=874984 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || |||||||| ||||| || ||| | || |||||||| | ||||| || Sbjct 311890 ATGCAGATTTTCGTAAAAACCCTGACAGGAAAGACCATCACTCTTGAGGATGAACCCTCG 311831 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| || || || || || ||| | || || || | ||| Sbjct 311830 GATACAATAGAAAATGTGAAAGCCAAGATCCAGGATAAGGAAAGAATTCCTCCTGTTCAG 311771 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| ||| ||||||| | || | || || |||||| Sbjct 311770 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 311711 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||||||||| || | ||| | || ||| Sbjct 311710 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTG 311678 >seq254768 Length=650996 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || || || ||||| || Sbjct 218202 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 218143 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || || || || || ||||| || || || || Sbjct 218142 TGACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCTGACCA 218083 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| ||||| || |||| || | || | || |||||||| Sbjct 218082 GCAGAGGCTTATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCTGATTACAA 218023 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || || ||||| ||| | || |||| |||| | ||||||||| Sbjct 218022 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGCCTCCGGGGTGGC 217974 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| || Sbjct 218429 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 218370 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || || || || || ||||| || || || || Sbjct 218369 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 218310 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || | || ||||||||| Sbjct 218309 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCTGATTACAAC 218250 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || | || |||| |||| | |||| ||||| Sbjct 218249 ATCCAGAAGGAATCCACTCTCCACCTGGTCCTGCGCCTCAGGGGAGGCAT 218200 >seq93685 Length=1386 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || || || || || || || Sbjct 802 CATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTAGAGCCCAG 743 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || || || || || ||||| || || || || Sbjct 742 TGACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCTGACCA 683 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| ||||| || |||| || | || | || |||||||| Sbjct 682 GCAGAGGCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCTGATTACAA 623 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || || ||||| ||| | || |||| |||| | ||||||||| Sbjct 622 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGCCTCCGGGGTGGC 574 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || || || ||||| || Sbjct 1030 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 971 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || || || || || ||||| || || || || Sbjct 970 TGACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCA 911 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || |||||||| | || | || |||||||| Sbjct 910 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCTGATTACAA 851 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | || |||| |||| | |||| ||||| Sbjct 850 CATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTCAGGGGAGGCAT 800 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || || || ||||| || Sbjct 1258 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 1199 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || || || || || ||||| || || || || Sbjct 1198 TGACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCA 1139 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || ||||||| | || | || |||||||| Sbjct 1138 GCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCTGATTACAA 1079 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || || | || |||| |||| | |||| ||||| Sbjct 1078 CATCCAGAAGGAATCCACTCTCCACCTGGTCCTGCGCCTCAGGGGAGGCAT 1028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433495291466012