Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq249408 136 3e-27 seq78631 136 3e-27 seq261730 127 1e-24 seq243700 122 6e-23 seq256153 114 9e-21 seq251325 114 9e-21 seq237447 114 9e-21 seq260417 109 4e-19 seq43725 87.8 1e-12 seq195288 82.4 5e-11 >seq249408 Length=399222 Score = 136 bits (150), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| |||||||| || |||||||| || ||||| || Sbjct 143838 AAAATGCAGATTTTCGTAAAAACCCTGACGGGAAAGACCATCACTCTTGAGGTTGAACCC 143779 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| | ||| || || || || ||||| | || || ||| Sbjct 143778 TCGGATACAATAGAAAATGTGAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 143719 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 143718 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 143659 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| | || || || Sbjct 143658 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 143621 >seq78631 Length=346750 Score = 136 bits (150), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| ||||||||||| |||||||| || ||||| || Sbjct 179415 AAGATGCAGATTTTCGTAAAAACCCTGACGGGAAAAACCATCACTCTTGAGGTTGAACCC 179356 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| | ||| || || || || ||||| | || || ||| Sbjct 179355 TCGGATACAATAGAAAATGTGAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 179296 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 179295 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 179236 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| | || || || Sbjct 179235 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 179198 >seq261730 Length=739691 Score = 127 bits (140), Expect = 1e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || || ||||||||||| |||||||| |||||||| || |||||||| || ||||| || Sbjct 78524 AAGATACAGATTTTCGTAAAAACCCTGACGGGAAAGACCATCACTCTTGAGGTTGATCCC 78583 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| | ||| || || || || |||| | || || ||| Sbjct 78584 TCGGATACAATAGAAAATGTGAAAGCCAAGATACAGGATAAGGAAGCAATTCCTCCTGAT 78643 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| ||||||||||||| ||| ||||| || ||| Sbjct 78644 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGACGGACGTACTTTGTCTGACTAC 78703 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| | || || || Sbjct 78704 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 78741 >seq243700 Length=14829 Score = 122 bits (134), Expect = 6e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| |||||| | | || ||||| || ||||| || Sbjct 8668 AAGATGCAGATTTTCGTAAAAACCCTGACGGGACAGATCATGACTCTTGAGGTTGAACCC 8727 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| | ||| || || || || ||||| | || || ||| Sbjct 8728 TCGGATACAATAGAAAATGTGAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 8787 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||||||||||||||| | | | ||||| | || ||| Sbjct 8788 CAGCAGAGACTGATCTTTGCTGGCAAACAACTGGAAGATGGAAGTACTTTGTGTGACTAC 8847 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| ||||| |||||||| Sbjct 8848 AACATTCAAAAGGAGTCCAC 8867 >seq256153 Length=874984 Score = 114 bits (126), Expect = 9e-21 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| || ||||| || |||||||| || | ||| || Sbjct 311893 AAGATGCAGATTTTCGTAAAAACCCTGACAGGAAAGACCATCACTCTTGAGGATGAACCC 311834 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| | ||| || || || || ||| | | || || | | Sbjct 311833 TCGGATACAATAGAAAATGTGAAAGCCAAGATCCAGGATAAGGAAAGAATTCCTCCTGTT 311774 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 311773 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 311714 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| | || || || Sbjct 311713 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 311676 >seq251325 Length=352111 Score = 114 bits (126), Expect = 9e-21 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | ||||| | | |||||| || |||||||| || ||||| ||| Sbjct 311307 AAGATGCAGATTTTCATAAAAACTCCGATGGGAAAGACCATCACTCTTGAGGTTGAATCC 311248 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | |||| ||||| || || | |||||||| | || || ||| Sbjct 311247 TCAGATACAATAGAAAATGTAAAAGCCAAGATCCGGAATAAAGAAGGAATTCCTCCTGAT 311188 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||| | | || ||||| ||||| ||||||||||| | | | ||||| || ||| Sbjct 311187 CAACAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 311128 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| ||||| || | ||| | || || || Sbjct 311127 AACATTCAAAAGGAGTCTACTCTTCATATTGTGTTGAG 311090 >seq237447 Length=29837 Score = 114 bits (126), Expect = 9e-21 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || |||||||| || ||||| || |||||||| || ||||| || Sbjct 13229 AAGATGCAGATTTTTGTAAAAACCCTGACAGGAAAGACCATCACTCTTGAGGTTGAACCC 13288 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||| || |||| | ||| || || || || ||||| | | || ||| Sbjct 13289 TCGGGTACAACAGAAAATGTGAAAGCCAAGATCCAGGATAAGGAAGGAATTCATCCTGAT 13348 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| || || ||||||||||| | ||| |||||| ||| ||| Sbjct 13349 CAGCAGAGACTGATCTTTGCTGGAAAGCAACTGGAAGATGGACGTACTTTATCCGACTAC 13408 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| | || || || Sbjct 13409 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 13446 >seq260417 Length=1194950 Score = 109 bits (120), Expect = 4e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || ||||| || || || || ||||| ||||| || || ||| Sbjct 432159 AATGCAGATTTTCGTGAAGACCCTGACTGGGAAGACCATCACCCTCGAGGTAGAGCCCAG 432218 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || | || | | ||||| ||||| | || || || | Sbjct 432219 TGACACCATTGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAAGGCATCCCCCCTGACC 432277 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || |||||||| || || ||||| || | ||||| | ||| |||| Sbjct 432278 AGCAGAGATTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACA 432337 Query 23789 ACATACAAAAAGAGTCCAC 23807 ||||||| ||||||||||| Sbjct 432338 ACATACAGAAAGAGTCCAC 432356 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||||| || || || || ||||| ||||| || || ||| Sbjct 431931 AATGCAGATCTTCGTGAAGACCCTGACTGGGAAGACCATCACCCTCGAGGTGGAGCCCAG 431990 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || | || | | ||||| ||||| | || || || | Sbjct 431991 TGACACCATTGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAAGGCATCCCCCCTGACC 432049 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || |||||||| || || |||||||| | ||||| | ||| |||| Sbjct 432050 AGCAGAGATTGATCTTTGCCGGGAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACA 432109 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 432110 ACATCCAGAAAGAGTCCAC 432128 >seq43725 Length=1898 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||||| | || || || ||||| ||||| || || ||| Sbjct 1577 AATGCAGATCTTCGTGAAGACCCTGTCCGGGAAGACCATCACCCTCGAGGTAGAGCCCAG 1636 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| ||| | | || || || ||||| ||||| | || || || || Sbjct 1637 TGACACCACTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCTGACCA 1696 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| || || |||||||||| | ||| | || ||||| Sbjct 1697 GCAGAGATTGATCTTTGCCGGGAAGCAGCTGGAAGACGGCCACACCCTGTCTGACTACAA 1756 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 1757 CATCCAGAAAGAGTCCAC 1774 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||||| || || || || || || ||||| || || ||| Sbjct 1349 AATGCAGATCTTTGTGAAGACCCTGACTGGGAAGACCATTACCCTCGAGGTAGAGCCCAG 1408 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| ||| ||| | || | || | | ||||| ||||| | || | || | Sbjct 1409 TGACACCACTGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAAGGCATCCCCTCTGACC 1467 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| || || || |||||||||| ||||| | ||| |||| Sbjct 1468 AGCAGAGATTGATCTTTGCTGGGAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACA 1527 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 1528 ACATCCAGAAAGAGTCCAC 1546 >seq195288 Length=145136 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/195 (70%), Gaps = 5/195 (3%) Strand=Plus/Minus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 |||||||||||| |||||||| | ||||||| | |||||||| || |||| ||| |||| Sbjct 129185 GCAGATTTTCGTAAAAACCCTTAAGGGAAAATCCATCACTCTTGAGGTTGGATCCTCGGA 129126 Query 23673 CACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACA 23732 | | |||| | ||| || ||| || || ||||| | || ||| | || Sbjct 129125 TTCAATAGAAAACATGAAAGCCAAGATTCAGGATAAGGAAGGAATTTTTCCTGAT-AGCA 129067 Query 23733 GCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACAT 23792 | | | || ||||| || || ||||||||||| | ||| ||||| | |||||| | Sbjct 129066 GAGACTCATCTTTGCTGGTAAGCAACTGGAAGATGGACGTACTTT----GTCTACAACTT 129011 Query 23793 ACAAAAAGAGTCCAC 23807 || || | |||||| Sbjct 129010 TCAGAAGGGGTCCAC 128996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336901110614672