Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq251882 239 3e-58 seq205975 226 2e-54 seq261394 143 2e-29 seq252517 118 8e-22 >seq251882 Length=196254 Score = 239 bits (264), Expect = 3e-58 Identities = 474/696 (68%), Gaps = 18/696 (3%) Strand=Plus/Plus Query 27102 TGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAG 27161 ||||| || ||||| || || | || |||||| | ||||| | | | ||||| ||| Sbjct 179215 TGTGGTAA--GGTCTTGGTTCTCGCTGAAGCTGAATTTTCAGTGCCTTGATGTGATTCAG 179272 Query 27162 GTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 27221 ||| | || || | || || ||||| || || || | || || || | ||| Sbjct 179273 GTAAATATGTGC-------AAAGTATGTACAAAGTCACCTGGCTTCAGGCCTGTAATGTG 179325 Query 27222 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 27281 | |||||||| || || |||| |||||||||||||| || | || || | |||| Sbjct 179326 CCCGATCATGTAGGTAAGCAGAGCATAGCTGGCGATGTTGAAATGCACACCCAAGCCCAA 179385 Query 27282 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT-CTCCATCGCTTACGTAAAACTGAC 27340 |||| |||| | ||||| ||||| |||||||||| || | || ||||| ||||| Sbjct 179386 GTCCTCCGAACGTTGGTACAGCTGGCACGAGAGCTGCTGC--TGCCCACGTACAACTGGT 179443 Query 27341 ATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAG-TCTTTGGGGTTCCAGGCGCAC 27399 | | |||||||||||| || |||||||| || ||| ||||| || ||||| || ||| Sbjct 179444 AGAGGGCGTGGCACGGCGGCAGAGCCATCAG----AAGATCTTTTGGATTCCAAGCACAC 179499 Query 27400 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGA 27459 | |||||| | ||||| | |||||| | |||| ||| | | || ||||| || Sbjct 179500 ATGATGATTCTTCTGTCATTGGGGTTGGTTTTGATTGTGTCAATCACCTTCTGCAGTTGG 179559 Query 27460 TCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTC 27519 || | || || ||||| ||| ||| || |||| ||||| || ||||||||| Sbjct 179560 TCTCCTCCTTGGCCTGAGTAATCTGAATTCACATCTTTGTATTCTGCCCCAAAATGCCTC 179619 Query 27520 CATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTG 27579 | || || || | ||| | |||| |||||| || || || ||| ||| | Sbjct 179620 CGCTGAAAGCCAGAAACCAGGCCCAAGTCTCCTTCCTCTCTCATGGAGAATCCCAGACAG 179679 Query 27580 TCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCT 27639 |||||||||| ||| || ||||||||||||| || || |||| |||| ||| Sbjct 179680 TCCAAAAAGTTGTGGGATCCACTGGCGTCCCAGATTTTCACTTCCTTGGAAGAGATTTCT 179739 Query 27640 TTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAG 27699 || | ||||||| || | || ||||||| || |||||||| || |||||||| || Sbjct 179740 TTAG-CATTGTGGATCCCTTAACAAACCACAACAACTCCTCCAAAACAGCCTTCCAGAAT 179798 Query 27700 ACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCA 27759 || | ||||| || || || ||||||| | | |||| ||| | ||||| | Sbjct 179799 ACACATTTGGTGGTCAGCAGAGGAAACTCATCTCTCAGGCTGTAGCGAGCCTGCAGGCTG 179858 Query 27760 AACACGGACAAGACTCCCGTGCCCGTCCTGTCTCCC 27795 |||||||||| | | ||||| || | ||| ||| Sbjct 179859 AACACGGACAGGGTGCGGGTGCCAGTGCAGTCCCCC 179894 >seq205975 Length=138355 Score = 226 bits (250), Expect = 2e-54 Identities = 430/627 (69%), Gaps = 12/627 (2%) Strand=Plus/Minus Query 27106 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 27165 ||||||| ||| | || | || |||||| | ||||| | ||| | ||||| | |||| Sbjct 52432 GGAAAGG-TCTCGATTCTCGCTGCAGCTGAATTTTCAGTGCTTCAATGTGATTCCGGTAA 52374 Query 27166 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 27225 | || || ||||||| || || ||||| || || || | || || ||| ||| || Sbjct 52373 ATTTGTGCATCTCCCAAAGTATGCACAAAGTCACCTGGCTTCAGGCCCCTGATGTGTGCG 52314 Query 27226 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT--TAAAGGGTACCCCGAGCCCCATGT 27283 |||||| | || | || | || | ||||| ||| | || || | ||||| ||||||| Sbjct 52313 ATCATGCAGTTGCGCAGGGCGTGGTTGGCGGTGTGTTGAAAGGCAGGCCGAGGCCCATGT 52254 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATA 27343 | || ||| |||||| ||||| ||||||||||| | || | | ||||| || | Sbjct 52253 CTCCTGACTGCTGGTACAGCTGGCACGAGAGCTCACTGCTGCCCCTGGAGAACTGGCAGA 52194 Query 27344 TGGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACA 27400 ||||||||| || | || || |||| ||| ||||| || ||||| || || | Sbjct 52193 AGGCGTGGCATGGCAGCAGCATTATCAGAGG---AAGATCTTTTGGATTCCAAGCACAAA 52137 Query 27401 CGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGAT 27460 |||||| | || | | |||||| | |||| ||| | | ||||||||||| | Sbjct 52136 TGATGATTCTTCTATAGTTGGGGTTGGTTTTGATTGTGTCAATCACCTTTTGCAGCTGGT 52077 Query 27461 CCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 27520 | | | || |||| ||| || | || |||| |||||||| |||||||||| Sbjct 52076 CTTCTCGTTGGCCTAAGTAATCTGAATTCCTATCTTTGTATTCTGCTCCAAAATGCCTCC 52017 Query 27521 ATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 27580 || || || || ||||| |||| |||||| |||| || ||| ||| ||| Sbjct 52016 CCTGAAAACCATAAACCGGGCCCAAGTCTCCTTCTTTGGTGGA---GAATCCCAGGCTGT 51960 Query 27581 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 27640 |||||||||| | ||| || |||||||| |||| || || || || ||||| |||| Sbjct 51959 CCAAAAAGTCGCGGGATCCAGTGGCGTCCTAGATTTTCACTCCTTTGGAAGAGAGGTCTT 51900 Query 27641 TGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGA 27700 | | ||||| || || ||| |||||||||| |||||||| || ||||||| || | Sbjct 51899 TAGCATTTGTAGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCCAGAATA 51840 Query 27701 CCCTCTTGGTCGTGAGGAGGGGAAACT 27727 | | ||||| | || || ||||||| Sbjct 51839 CACGTTTGGTGATCAGCAGAGGAAACT 51813 >seq261394 Length=468452 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | |||||||||||||| || || Sbjct 93278 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAAGGC 93337 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||||||||||| ||||| ||||||||||||||||| || || Sbjct 93338 ACACCCAGGCCCATGTCCCCCGACCGTTGGTACAGCTGACACGAGAGCTCGCCGCTGCCC 93397 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | ||| |||||||| || || ||||| || Sbjct 93398 ACGTAGAACTGGCAGAGGGCATGGCACGGCGGCAGCGCCATCAG 93441 Score = 107 bits (118), Expect = 1e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 27498 GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 27557 ||| ||||| || ||||||||||| || || || || ||||| |||| |||||| ||||| Sbjct 97241 GTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACCGGGCCCAAGTCTCCTTCTTC 97300 Query 27558 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 27617 ||| ||| ||| ||||||||||||| | ||| || ||||| |||||||| || Sbjct 97301 TCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCGCGGGATCCATTGGCATCCCAGATTTT 97360 Query 27618 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 || ||||| || || ||||| | |||||||| || Sbjct 97361 CACTCCCTTGGAAGAAAGTTCTTTAGCATTTGTGGATCC 97399 >seq252517 Length=296032 Score = 118 bits (130), Expect = 8e-22 Identities = 309/462 (67%), Gaps = 11/462 (2%) Strand=Plus/Minus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 ||||||||| ||| ||||| | || |||||| | ||||| | | | ||||| || || Sbjct 235235 TGGGAAAGG-TCTTGGCTCTCACTGAAGCTGAATTTTCAGTGCCTTAATGTGATTCAAGT 235177 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTT-CTAGCCCGGTGACGTGA 27222 | || | | ||||||| || || |||| || || |||| | |||| | ||| || Sbjct 235176 AAACATCTTCATCTCCCAAAGTATGTGCAAAGTCACCTGGTTTCCAGCCTG-TGATATGT 235118 Query 27223 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 27282 | ||||| || | || | ||||||| ||||| || || || || || |||| Sbjct 235117 GTGATCATTTAGGCAAGCCTGGCATAGCTGGTAATGTTGAAAGGCACACCAAGGACCATT 235058 Query 27283 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACAT 27342 | || |||| |||||| |||| ||| ||| |||| | | | | || ||||| || Sbjct 235057 CCTCCTGACCACTGGTACAGCTCACATGAGCGCTCACTACTGACCATGTTGAACTGGCAG 234998 Query 27343 ATGGCGTGGCACGG-AGGAAGAGCCATGA--GGCCCAAGTCTTTGGGG-TTCCAGGCGCA 27398 | || ||| || || || ||| ||| | | || ||| ||| || ||||| || || Sbjct 234997 AGGGTGTGCCATGGCAGCAAG-GCCTTCAAAGG---AAGAGTTTCTGGATTCCAAGCACA 234942 Query 27399 CACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTG 27458 || |||||| | |||| | | |||| | |||| ||| | | ||||||||||| Sbjct 234941 CATGATGATTCTTCTGTTATTGGTGTTGATTTTGATTGTGTCAATCACATTTTGCAGCTG 234882 Query 27459 ATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCT 27518 ||| || || || | || ||| |||| || |||| ||||| || || ||||| Sbjct 234881 ATCTACTCCTTGGCCTAAATAATCTGAATTCATTTCTTTGTATTCTGCCCCAAAGTGCCT 234822 Query 27519 CCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 27560 ||| || || || || || || ||| || ||| ||||| || Sbjct 234821 CCAGTGAAAGCCATAAACTGGGTCCATGTATCCTTCTTCTCT 234780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368295415456004