Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq253248 181 2e-40 seq252333 89.7 7e-13 >seq253248 Length=169641 Score = 181 bits (200), Expect = 2e-40 Identities = 190/250 (76%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || || | |||||||| | |||||||| | ||||| ||| |||||||||||| || Sbjct 88885 CCTATCAGGATGAGTCTGCTTGTCTGGAATAACTGCTCATCATCCCATTCTGGATGCTCC 88826 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 ||||| || ||||||||||| ||||| ||||||| ||||| || || || |||||||| Sbjct 88825 TGTTTAAGCACATCGCACACTCTGTTATGTTCCCGAAGCCATATTGTTGCATACATCATC 88766 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACT 9414 || ||||| ||||| || || |||| || || ||||| || |||| || ||| || || Sbjct 88765 AGACCAGGCACCAGACCGAAGACCTCCTGCCCCACAGCAAGCCGCAGGTGTTCAGGGACA 88706 Query 9415 TCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCG 9474 | || || |||||||| | ||||| |||||||| | ||| |||||||| || ||| Sbjct 88705 TGAGGGGGGTAGATCATCTCTACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCG 88646 Query 9475 TCAATCATCT 9484 |||| |||| Sbjct 88645 CCAATTATCT 88636 Score = 143 bits (158), Expect = 4e-29 Identities = 204/287 (71%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| || || || || | |||| ||||| || || | || | |||| ||| Sbjct 90456 AAGGGACAGCCTTTCACATTATTGCAGATGAGAGATTGGATTGAGGCTGTGTTGATGATT 90397 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || || ||||| || || ||||| ||||||||||| | || || || ||| Sbjct 90396 TTAAAACCTGTTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTCAGGAGAACATATGGGA 90337 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 ||| ||||||| ||||| | ||||||||||| |||| || | ||| ||||||| ||| Sbjct 90336 TTCCCCATGAGTCCTTTCAAAGAGAACGGAGCTCCCATTTCTACCATGGTCTCACCAAAG 90277 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 ||||||| ||||| |||||||| |||| | | | |||||||||| ||| || | | Sbjct 90276 ATGGCGTCTGGACGAGGCTTTTCTACCAGCAGAGCAGGATACAGCTCCATAGCATCAATG 90217 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || ||||| || | | || ||||| |||||||| |||||||| Sbjct 90216 TCCCCGTAGAGCTCTTCTAACTCCGCAGCCATCTCCTTCTCTCCTGT 90170 Score = 100 bits (110), Expect = 4e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| |||| |||||| ||||| | || ||| | ||| ||| | || Sbjct 87781 TCTTACCCCATGACCCAATCCTTTGGTGAAACCTGGTCCTTGTTTGTGATCTGTCTTGAA 87722 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || || |||| || |||||||| | || |||||||| ||||| Sbjct 87721 AAACTGATGGGTGAAGTGCTGAGCAAAGAACGCAAACATCATATTTGTGCCCTGAGGATC 87662 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 ||| |||| | || | |||||| |||||||||| Sbjct 87661 GGGGATGAACTTTCTTCTTAGAAGAAACTTTTCCACAA 87624 >seq252333 Length=163683 Score = 89.7 bits (98), Expect = 7e-13 Identities = 106/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 9646 TGTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTC 9703 ||| || |||||||| |||| | || |||||| | || || || |||| | ||| Sbjct 64575 TGTACTCACCCCATGGCCCAAGGCCTTGGTGAAGCCGGGACCCATCTTGCCAGA--AGTT 64632 Query 9704 CTAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGG 9763 | || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| ||| Sbjct 64633 TTGAAGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGG 64692 Query 9764 GGATCGGGAGTGAAGGTCCTCC 9785 || || || |||| |||||| Sbjct 64693 GGGTCAGGTATGAACTTCCTCC 64714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714465549039360