Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq254768 158 3e-33 seq93685 152 1e-31 seq260417 150 4e-31 seq243700 136 9e-27 seq251325 131 4e-25 seq43725 127 5e-24 seq260428 98.7 2e-15 seq195288 91.5 4e-13 >seq254768 Length=650996 Score = 158 bits (174), Expect = 3e-33 Identities = 177/234 (76%), Gaps = 7/234 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || |||||||| || || || || || || |||||||| |||| Sbjct 218437 AGGTCAAAATGC---AGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGG 218381 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| ||||||||||||||||||| ||||| ||||| || || || || Sbjct 218380 TGGA--GCCCAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCAT 218323 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | |||||||| || || || ||||| |||||||| | ||||| Sbjct 218322 CCCCCCTGACCAGCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCT 218263 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 | ||||| ||| |||| || ||||| || || || || || || | ||||| Sbjct 218262 CTCTGATTACAACATCCAGAAGGAATCCACTCTCCACCTGGTCCTGCGCCTCAG 218209 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 218198 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 218141 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| ||||| || || || || || || ||||||| Sbjct 218140 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCTGACCAGC 218081 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | ||||||||||| || || ||||| || ||||| | ||||| | ||||| ||| Sbjct 218080 AGAGGCTTATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCTGATTACAACA 218021 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 218020 TCCAGAAAGAGTCCACCCTGCACCTGGT 217993 >seq93685 Length=1386 Score = 152 bits (168), Expect = 1e-31 Identities = 167/220 (76%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 1254 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1197 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| ||||| || || || ||||| || ||||||| Sbjct 1196 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAGC 1137 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | |||||||| || || || ||||| |||||||| | ||||| | ||||| ||| Sbjct 1136 AGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCTGATTACAACA 1077 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || ||||| || || || || || || | ||||| Sbjct 1076 TCCAGAAGGAATCCACTCTCCACCTGGTCCTGCGCCTCAG 1037 Score = 149 bits (164), Expect = 2e-30 Identities = 166/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 1026 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 969 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| ||||| || || || ||||| || ||||||| Sbjct 968 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAGC 909 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||| || | ||||| | ||||| ||| Sbjct 908 AGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCTGATTACAACA 849 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || ||||| || ||||| || || || | ||||| Sbjct 848 TCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTCAG 809 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| ||||| || || ||| Sbjct 798 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTAGA--GCCCAGTG 741 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| ||||| || || || || || || ||||||| Sbjct 740 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCTGACCAGC 681 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| || ||||| | ||||| | ||||| ||| Sbjct 680 AGAGGCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCTGATTACAACA 621 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 620 TCCAGAAAGAGTCCACCCTGCACCTGGT 593 >seq260417 Length=1194950 Score = 150 bits (166), Expect = 4e-31 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || || || || || || |||||||||||||||| ||| || | Sbjct 431935 CAGATCTTCGTGAAGACCCTGACTGGGAAGACCATCACCCTCGAGGTGG--AGCCCAGTG 431992 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct 431993 ACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCTGACCAGC 432052 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 432053 AGAGATTGATCTTTGCCGGGAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 432112 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || || | || ||| Sbjct 432113 TCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTTAGA 432153 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || |||||||| | || || ||||| |||||||||||||||| ||| || | Sbjct 431707 CAGATCTTTGTGAAAACCTTAACGGGTAAAACTATCACCCTCGAGGTGG--AGCCCAGTG 431764 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct 431765 ACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCTGACCAGC 431824 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 431825 AGAGATTGATCTTTGCCGGGAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 431884 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || || | || ||| Sbjct 431885 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTTAGA 431925 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || ||||||||||| || || || || || || |||||||||||||| | ||| || | Sbjct 432163 CAGATTTTCGTGAAGACCCTGACTGGGAAGACCATCACCCTCGAGGT--AGAGCCCAGTG 432220 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct 432221 ACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCTGACCAGC 432280 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| ||||| || ||||| || ||||| | || || |||| || ||| Sbjct 432281 AGAGATTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACA 432340 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||||| || || ||||| || || Sbjct 432341 TACAGAAAGAGTCCACCCTGCACCTGGT 432368 >seq243700 Length=14829 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| || || ||| | | || || || ||||| ||| ||| || Sbjct 8674 CAGATTTTCGTAAAAACCCTGACGGGACAGATCATGACTCTTGAGGTTGAACCCTCGGAT 8733 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||| ||||| || |||||||| ||||| || ||||| Sbjct 8734 ACAATAGAAAATGTGAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAG 8793 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || ||||| || ||||||||||| ||| | || || ||| | Sbjct 8794 AGACTGATCTTTGCTGGCAAACAACTGGAAGATGGAAGTACTTTGTGTGACTACAACATT 8853 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || | |||||| |||||||| Sbjct 8854 CAAAAGGAGTCCACTCTTCTTCTTGTGTTGAGACT 8888 >seq251325 Length=352111 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||| | ||||||| | ||||| || ||||| || ||||| ||| |||||| Sbjct 311301 CAGATTTTCATAAAAACTCCGATGGGAAAGACCATCACTCTTGAGGTTGAATCCTCAGAT 311242 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||| | | | ||||||||||| ||||| || || || Sbjct 311241 ACAATAGAAAATGTAAAAGCCAAGATCCGGAATAAAGAAGGAATTCCTCCTGATCAACAG 311182 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || || ||| | Sbjct 311181 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACATT 311122 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||| |||| |||||||| Sbjct 311121 CAAAAGGAGTCTACTCTTCATATTGTGTTGAGACT 311087 >seq43725 Length=1898 Score = 127 bits (140), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || || | || || || |||||||||||||| | ||| || | Sbjct 1581 CAGATCTTCGTGAAGACCCTGTCCGGGAAGACCATCACCCTCGAGGT--AGAGCCCAGTG 1638 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||| ||||||||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct 1639 ACACCACTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCTGACCAGC 1698 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| ||||| || ||||| ||||| || || || | || || ||| Sbjct 1699 AGAGATTGATCTTTGCCGGGAAGCAGCTGGAAGACGGCCACACCCTGTCTGACTACAACA 1758 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 1759 TCCAGAAAGAGTCCACCCTGCACCTGGT 1786 Score = 116 bits (128), Expect = 9e-21 Identities = 152/207 (73%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || || ||||||||||| | ||| || | Sbjct 1353 CAGATCTTTGTGAAGACCCTGACTGGGAAGACCATTACCCTCGAGGT--AGAGCCCAGTG 1410 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||| ||||| ||||| ||||| || ||||| ||||| ||||| | ||||||| Sbjct 1411 ACACCACTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCTCTGACCAGC 1470 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| || || || ||||| ||||| || | || || |||| || ||| Sbjct 1471 AGAGATTGATCTTTGCTGGGAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAACA 1530 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || ||||| |||| Sbjct 1531 TCCAGAAAGAGTCCACCCTGCA-CTTG 1556 >seq260428 Length=385943 Score = 98.7 bits (108), Expect = 2e-15 Identities = 119/161 (74%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||||||| | || ||||| ||||| | ||| | ||||| || |||||| Sbjct 165786 GACACCATCGAGAACATGAAGGCCAAGATCCAGGATTAGGAAAGCATCCC-CCTGACCAG 165844 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||| | || ||| | || || || ||||| |||||||| | |||||| | ||| | ||| Sbjct 165845 CAAGGGCTCATCGTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTCCTGATCACAAC 165904 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || ||||| | ||||| || | |||| ||||| Sbjct 165905 ATCCAGAAGGAATCTCCCCTGCACCTGGCCCTGAGCCTCAG 165945 >seq195288 Length=145136 Score = 91.5 bits (100), Expect = 4e-13 Identities = 118/162 (73%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| || | |||||| | ||||| || ||||| | | ||| || Sbjct 129184 CAGATTTTCGTAAAAACCCTTAAGGGAAAATCCATCACTCTTGAGGTTGGATCCTCGGAT 129125 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || ||| | ||| ||||||||||| || |||||||| ||| || |||| Sbjct 129124 TCAATAGAAAACATGAAAGCCAAGATTCAGGATAAGGAAGGAATTTTTCCTGA-TAGCAG 129066 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085 |||| ||||| || || || || || ||||||||| | ||| Sbjct 129065 AGACTCATCTTTGCTGGTAAGCAACTGGAAGATGGACGTACT 129024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1199581169670296