Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq14405 114 2e-20 seq5984 111 2e-19 seq34970 86.0 7e-12 >seq14405 Length=70954 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| ||||| || || ||||| ||||||||||| | ||| | Sbjct 59508 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATTAGGCCCCTCTTCT 59567 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | ||||| || || || ||||| || ||||| ||||| ||||||| Sbjct 59568 TCAGCCAAAATATAGCAGCAAAGGAACCCGAGAAGAAGATGCCTTCCACTGCAGCAAAGG 59627 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | ||| || || Sbjct 59628 CAACCACTCTCTCACC 59643 >seq5984 Length=37620 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | ||| | Sbjct 3009 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCT 2950 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||||| || || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 2949 TCAGCCAAAAAATTGATGCAAAGGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAAG 2890 Query 24277 C 24277 | Sbjct 2889 C 2889 >seq34970 Length=16158 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 54087 ||||| ||||| ||||||||||||||||| || || | ||| || ||||||| ||| || Sbjct 8621 CACTCTCTTCATGAAGAGATCAGGAATCCAGAGTGCAAAAAAGAGGTCTCTGGCTCTCTG 8680 Query 54088 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 || || || || || ||||| || | || |||||| | | || || ||||| || Sbjct 8681 CTCTTCCTTCCCAGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAGGTGCCATGG 8740 Query 54148 TTCCAAGTATATGGTCATAACTCCAGG 54174 |||| ||| |||| | | | ||||| Sbjct 8741 CTCCAGGTAGATGGCAAAAGCCCCAGG 8767 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818 ||||||||||| || || || ||||||||||| || | || || || || ||||| || Sbjct 7844 ATCTCAGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTG 7903 Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATC 53878 || || | ||||| || || ||| | || || ||||| || ||||||| || || || Sbjct 7904 TTGCAGGAGTCCTTGTAGAGCATGTAAGGAGTGCCAGTCTCCGTCTGGGACTCGATGATG 7963 Query 53879 GCTTTCCAGA 53888 || | ||||| Sbjct 7964 GCATACCAGA 7973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593321765610000