Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq8566 150 2e-31 seq8660 114 2e-20 >seq8566 Length=4846 Score = 150 bits (166), Expect = 2e-31 Identities = 184/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||||||||||||||| | ||||||||||||||| || |||||| || ||| Sbjct 4532 GAACTTCTCGAAGTTCCAGGCGATGTCGTTGCGGCACACCGGGGACCAGATGATATACTG 4591 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262 |||| ||| |||| | ||||||| || ||||| || ||| ||||| Sbjct 4592 CGGGTTCGTCATCAGCGAGGAGGGGTCGTCGTGCGGGAAGGGCAGCGCTTCTTTCAGGAA 4651 Query 83263 GGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTT 83322 || |||||| || ||| | | ||||| ||||||||||||||||| | || ||||| Sbjct 4652 GGTGAAGAGAGGGTGTTCGTTCTTCCCGTTCACCTCGCACTTCTCGAACATGATGAAGTT 4711 Query 83323 CGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTG 83382 |||| | | ||||| |||||||| ||||||| ||| |||| |||||| | || Sbjct 4712 GGGCTTGTACCCGTTGCCAGGACGAACGTGCTCCAGCATGGGCAGGATCTCATCGTTGGT 4771 Query 83383 GGCGTTTTCCT 83393 ||||||||||| Sbjct 4772 GGCGTTTTCCT 4782 >seq8660 Length=4406 Score = 114 bits (126), Expect = 2e-20 Identities = 244/350 (70%), Gaps = 22/350 (6%) Strand=Plus/Plus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGG-CAG-CGGTGGCTGTACCTG 83113 ||| ||| || |||||| ||||||| || | | ||| ||| ||| ||||||| | | Sbjct 2163 GAGGAGGCGCTGGATGTCAGGCTCCA--GCTGGATTGTGGGCAGGCGGGGGCTGTAGCGG 2220 Query 83114 CGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTG 83173 || | || || || | ||||||| |||||||||||||||||||| | |||| | Sbjct 2221 CGGAATGGTTCCCCCTCGGGCCCCACCAGGAACTTCTCGAAGTTCCAGGAGATGTCGGAG 2280 Query 83174 CGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCA-CGAGC--GTGCTCATG-TC 83229 || | ||| || ||||| ||| | | || ||||| | | | ||| | | || Sbjct 2281 CGCCGCACGGGGCTCCAGG---TGA-CAAAGCGTGGCTCAGCCATCAGGTGTGCTGGCTC 2336 Query 83230 GTCGCTAGGCGCCGGCAGG---GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTT 83284 ||| ||||| |||||| |||| || ||| |||| |||| ||||| || |||| Sbjct 2337 GTCAGACGGCGCAGGCAGGTGAGCCT-TC--AGGTAGGCAAAGACAGGATGGGTGTCCTT 2393 Query 83285 GCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGA 83344 | |||| |||| |||||||| ||| || | ||||| ||||||||||| |||||| Sbjct 2394 CC--CGTTCACCTGGCACTTCTGGAACAGGGTGAAGTTGGGCTCGAAGCCTCCCCCAGGC 2451 Query 83345 CGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 || ||||||||||||| | |||||| |||| | |||| ||||| Sbjct 2452 CGCACGTGCTTCAGGGTGTTGAGGATCTCCTCATTGGTGCCGTTCTCCTG 2501 Score = 105 bits (116), Expect = 8e-18 Identities = 121/160 (76%), Gaps = 7/160 (4%) Strand=Plus/Plus Query 83384 GCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCT 83443 ||| || |||||| || ||||||||||| ||||| || ||||| ||||||| ||| | Sbjct 2572 GCGCTTACCTGGTAGCCAAACTGGTTACAGGGGAAGCCCAGCACGACCAGCCGCCGGGG- 2630 Query 83444 CCTAGGCGCC-GCT-GCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGA 83501 || || ||| | |||| ||| | ||| ||||| |||| |||||| | ||||||| Sbjct 2631 ----GGAGCGTGCTTGGAGCTGGTTGAGCTGGGTGTAGTCCCTCACCGTGGTGCCTCAGA 2686 Query 83502 GGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | || ||||||||||| ||||| | || |||||||| || Sbjct 2687 GTGATGCTACGTTCTCAATGAGGACCACTCGGCCCCGGAA 2726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608386813405000