Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq30931 136 4e-27 seq14405 84.2 2e-11 seq5984 84.2 2e-11 >seq30931 Length=27074 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 53 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 112 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| || || | ||||| || || || ||| | ||||| Sbjct 113 GATACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCA 171 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| || || |||||||| || | ||||||||| |||||||| Sbjct 172 GCAGAGGCTGATCTTCGCTGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 231 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| ||||| || ||| ||||| | ||||| ||| Sbjct 232 CATCCAGAAGGAATCCACCCTGCACCTCGTGCTGCGCCTCAGGGGTGGC 280 >seq14405 Length=70954 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||| ||||| || || || ||||||| Sbjct 59633 TGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTCTCGGGTTCCTTTGCTGCTATATTTT 59574 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || ||||||||| ||| || || || ||| | Sbjct 59573 GGCTGAAGAAGAGGGGCCTAATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAG 59514 Query 117162 ACGAGG 117167 | |||| Sbjct 59513 ATGAGG 59508 >seq5984 Length=37620 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 116604 GGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGG 116663 ||||||| || |||||||| || |||| ||||| |||| |||||||| |||||||||| Sbjct 1 GGTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTACAAGAAGGCCGAGG 60 Query 116664 CGTCGTTCTGGACCGTCGAGGAGGTG 116689 | || || ||||| | ||||||||| Sbjct 61 CCTCCTTTTGGACGGCGGAGGAGGTG 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514872232070000