Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq11599 100 2e-16 >seq11599 Length=78777 Score = 100 bits (110), Expect = 2e-16 Identities = 137/186 (74%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| ||||| |||| | || |||||||| ||||| || |||||||| ||| Sbjct 73155 GTGACATGGGCAATCATGTAAGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCT 73214 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCA-TCACACACATA 97235 ||||||||||| | || | ||||| | || || || | | ||| | ||| ||||| Sbjct 73215 AGTCCCATATCTCCAGACCGCTGATAGAGTTGGCAAGACAATTCACCATTTACA-ACATA 73273 Query 97236 AAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCA 97295 |||||| | | ||||| || || ||||| ||||| | || ||||| || ||| | Sbjct 73274 AAACTGGCAAAGGACATGGCATGGAGGCAAAGCCATCAGAGAAATATCTAGGA-ATT-GA 73331 Query 97296 AGCACA 97301 |||||| Sbjct 73332 AGCACA 73337 Score = 95.1 bits (104), Expect = 8e-15 Identities = 110/148 (74%), Gaps = 8/148 (5%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||||||||||||| |||||||| ||||| ||||| || ||||| | || || || ||| Sbjct 76811 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATACACTGGTCCCAAATCCCCCTCCTCT 76870 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517 || | |||||| ||||||| |||| || |||||||| ||||||||||| Sbjct 76871 CTGGTGCTGAAACCCTGCTTATC----CAGGAACTCACGCGATCCATTAGCATCCCAAAT 76926 Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTG 97545 | |||||| ||| | ||||||||| Sbjct 76927 CTTCACACCTTTTGCAGAGAGCTCTTTG 76954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346556301083750