Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq41690 304 9e-78 seq13421 82.4 5e-11 >seq41690 Length=853 Score = 304 bits (336), Expect = 9e-78 Identities = 551/805 (68%), Gaps = 6/805 (1%) Strand=Plus/Plus Query 107524 TCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACA 107583 ||||||| || || ||| || ||||| ||| ||| | | |||| | | || Sbjct 24 TCAACTGCTCGGGCATCGTCCGCGGGGAGCAGAGAGCCCTCGAGGAGGCTCAGATCAGCA 83 Query 107584 ACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCA 107643 ||||||| ||| ||| | || | || || || | | | ||||| ||||| || | Sbjct 84 ACCTGGAGGTGGCGAACAGAAGGGCTCCGCTGACCCCCGGCGAGTACCTGAACATGACGA 143 Query 107644 GAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAG 107703 | ||||| ||| ||||| || ||||||| ||||||| || || |||| | Sbjct 144 GGGACTGCAGAAGCTACAAGGAGGCTCGGCAGTTCATCGAGTTCCCGCTCAGCCAAGAGG 203 Query 107704 AGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAAC 107763 || ||| |||||||| || ||||| |||||| |||| | || || || | || || Sbjct 204 AGGCAGAGTTCCCCATCGCTTACTCCATGGTGATCCACAACAAAATCGAGATGTTCGAGA 263 Query 107764 GGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGT 107823 |||| ||||| | | || || || ||||| || |||||||||||| | || |||| Sbjct 264 GGCTCCTGCGGTCTCTCTACGCTCCCCAGAATATCTACTGTGTCCACATCGACAGCAAGT 323 Query 107824 CCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCA 107883 |||| | ||| | ||||| || |||||| |||||||||||| |||||| Sbjct 324 CCCCGGCTGAATTCCAGGAGGCTGTGCGGGCCATCGCAGGCTGCTTCCCCAACGTCTTCG 383 Query 107884 TGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGA 107943 |||||||| ||| ||||| ||||||||||||||| | |||| |||||||| | Sbjct 384 TGGCCAGTCGCCTGGAAAGCGTGGTCTATGCCTCCTGGTCCCGGCTGCAGGCTGACCTCA 443 Query 107944 ACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCG 108003 |||| ||| | ||| |||| |||||| | ||||| ||| ||| | || || || |||| Sbjct 444 ACTGCATGCAGGACCTGCTGCAGAGCCCTGTGCCTTGGCGCTACATCCTCAACACCTGCG 503 Query 108004 GGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGG 108063 | || ||||||||||| |||||||| |||||||| |||| ||||| ||| || || ||| Sbjct 504 GCACCGACTTCCCCATCAAGACCAACGCCGAGATTGTCCGTGCCCTGAAGGTGCTGCAGG 563 Query 108064 GTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACC 108123 | |||||| |||||||| ||| || || | |||| | |||||| | |||| Sbjct 564 GACGGAACAGCATGGAGTCAGAGAAGCCCTCGGCAGCCAAGCAGGGACGCTGGCAGTACC 623 Query 108124 GCTATGA---GGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTG 108180 | | || || || | || | | || || | | | || | || || || Sbjct 624 ACCACGAAGTGGGGAATGTCA---TCTCCCGCACTGCCCAAAAAAAACAGCCACCACCCC 680 Query 108181 ATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAAC 108240 | || | |||||||||||||| |||||||| | |||| | | || | ||| || || | Sbjct 681 ACAACTACCCCATGTTCACAGGTAATGCCTACATCGTGGTCACACGGGACTTCGTGCAGC 740 Query 108241 ATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCC 108300 | |||| || ||||| | | |||| | | || |||| || ||||| || |||| Sbjct 741 ACATCTTTGAGAACCCCACGGCACAAAAGTTCCTCGAGTGGGCTAAGGACACGTACAGCC 800 Query 108301 CCGACGAACACCTCTGGGCCACCCT 108325 | ||||| ||| ||||||||||||| Sbjct 801 CTGACGAGCACGTCTGGGCCACCCT 825 >seq13421 Length=129160 Score = 82.4 bits (90), Expect = 5e-11 Identities = 219/331 (66%), Gaps = 4/331 (1%) Strand=Plus/Minus Query 107700 GAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTT 107759 ||||| ||| || || ||||| ||||| || ||||| || | || ||||| | || Sbjct 121007 GAAGAAGCAGAATTTCCAATTGCTTACTCAATAGTGGTTTATCACAAAATTGAGATGCTT 120948 Query 107760 GAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTG 107819 || | || || || | | ||||| || ||||| | ||||| | || || || Sbjct 120947 GATAGACTCCTAAGATCAATCTATGCTCCCCAGAATTTTTACTGCATTCATGTAGACAAA 120888 Query 107820 AAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTC 107879 || || ||||| |||| | || || |||| || | || || || |||||| Sbjct 120887 AAATCTCCAGAATCTTTTTTTGCTGCTGTGAAGGGAATAGTCTCATGTTTTGATAATGTC 120828 Query 107880 TTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGAC 107939 || || ||||| |||| | ||||| ||||| || ||| |||||||| || ||| Sbjct 120827 TTTATTGCCAGCCAGTTAGAGAGTGTGGTATATGCTTCATGGAGTAGAGTGCAGGCAGAC 120768 Query 107940 CTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGTACTTACTGAATA 107997 | ||||| ||| |||| | || |||| ||| | | ||||| ||| | | ||| Sbjct 120767 ATTAACTGCATGAAAGATCT-CTACAGAAGA-AGTTCAAACTGGAAATACCTCATAAATC 120710 Query 107998 CATGCGGGACAGACTTCCCCATAAAGACCAA 108028 ||| || | ||||| || ||||||||||| Sbjct 120709 TATGTGGTATGGACTTTCCTATAAAGACCAA 120679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348040126161750