Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq30931 107 2e-18 >seq30931 Length=27074 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| |||||||| ||||||||||| ||| ||| | || ||||| || Sbjct 256 GTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTG 197 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| || ||| ||||| || || | ||| ||||||||| || || Sbjct 196 CTTCCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTT 137 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | | || | ||| || |||| ||| || |||||||| || Sbjct 136 GGCCTTCACGTTCTCAATGGTATCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGT 77 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||||||| ||||| ||||| Sbjct 76 CAGGGTCTTCACGAAGATCTGCAT 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394815793006375