Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq14405 120 4e-22 seq4179 120 4e-22 seq5984 111 2e-19 seq34970 86.0 8e-12 >seq14405 Length=70954 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || ||||| ||||||||||| | ||| | Sbjct 59508 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATTAGGCCCCTCTTCT 59567 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || || ||||| || ||||| ||||| ||||||| Sbjct 59568 TCAGCCAAAATATAGCAGCAAAGGAACCCGAGAAGAAGATGCCTTCCACTGCAGCAAAGG 59627 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 59628 CAACCACTCTCTCACC 59643 >seq4179 Length=7699 Score = 120 bits (132), Expect = 4e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || | |||| | | | ||| || ||||||||||||||||| ||| Sbjct 1302 TATTTTTTATTAAATGCCTCCAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATGTCC 1361 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| |||||| | || | | || |||||||| || | || || || || | Sbjct 1362 AAGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGGGACAATTTGTGCATCAGCAAA 1421 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 || |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| | Sbjct 1422 TGAGTGTCATAAATAATAAATCCACAGAAGAGAAGAGCTCCAGCAGCAGCAAACACCAAC 1481 Query 9408 TCCACTGTTTCACT 9421 || ||||| ||||| Sbjct 1482 TCTACTGTCTCACT 1495 Score = 93.3 bits (102), Expect = 6e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| || ||||| ||||||||||| || | ||||| ||||||| ||||| Sbjct 2669 CCTGCTCCAAACTTGCTGAAGTCTCTCTTTGACTGCAAGGTATAAGCAGTCAATCCAAGA 2728 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593 || || |||||||| || || || ||||||| |||| |||||||||||| Sbjct 2729 AATACAGCAGTAGTAAGAATAAAGGCTTGCAAGACGATGGAGACATCATAGAAA 2782 >seq5984 Length=37620 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | ||| | Sbjct 3009 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCT 2950 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 2949 TCAGCCAAAAAATTGATGCAAAGGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAAG 2890 Query 36300 C 36300 | Sbjct 2889 C 2889 >seq34970 Length=16158 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 66059 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATG 66118 ||||| ||||| ||||||||||||||||| || || | ||| | ||||||| ||| || Sbjct 8621 CACTCTCTTCATGAAGAGATCAGGAATCCAGAGTGCAAAAAAGAGGTCTCTGGCTCTCTG 8680 Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || || || || ||||| || | || |||||| | | || || ||||| || Sbjct 8681 CTCTTCCTTCCCAGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAGGTGCCATGG 8740 Query 66179 TTCCAAGTATATGGCCATAACTCCAGG 66205 |||| ||| ||||| | | | ||||| Sbjct 8741 CTCCAGGTAGATGGCAAAAGCCCCAGG 8767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657729561755000