Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq14405 132 6e-26 seq5984 120 4e-22 seq34970 105 9e-18 >seq14405 Length=70954 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| ||||| || || ||||| ||||||||||| | ||| | Sbjct 59508 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATTAGGCCCCTCTTCT 59567 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| ||||| || || || |||||||| ||||| ||||| ||||||| Sbjct 59568 TCAGCCAAAATATAGCAGCAAAGGAACCCGAGAAGAAGATGCCTTCCACTGCAGCAAAGG 59627 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | |||||| || Sbjct 59628 CAACCACTCTCTCACC 59643 >seq5984 Length=37620 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | ||| || ||||| |||||||| ||||||| || | ||| | Sbjct 3009 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCT 2950 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || || ||||| || |||||||||||||||||||| || || ||||| | Sbjct 2949 TCAGCCAAAAAATTGATGCAAAGGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAAG 2890 Query 42207 C 42207 | Sbjct 2889 C 2889 >seq34970 Length=16158 Score = 105 bits (116), Expect = 9e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || ||||||||||| || || || ||||| || |||||||| || | Sbjct 13332 CACTGAAGACTTTCTTGGTTTCCTTGTGCAGGTTGGAGACGGCAATCCTGGCGGCCAGGA 13391 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 |||| || || || || | || || ||||| ||| | ||||| ||||| ||||||| Sbjct 13392 TGGCGTAGTCAGGGTGCTTGGTGGTCAGGGTGGCAGCTGTCTCTGCCGCCAGCGTGTCCA 13451 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || ||||| || || ||| | || | || ||||| |||||||| Sbjct 13452 GCTCCACCGTGGTCACACCACTGTACAGCCCCTGGATCACCTTCAT 13497 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 |||| ||||| ||||||||||||||||| || || | ||| || ||||||| ||| ||| Sbjct 8622 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGTGCAAAAAAGAGGTCTCTGGCTCTCTGC 8681 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || || || || ||||| || | || |||||| | | || || ||||| || Sbjct 8682 TCTTCCTTCCCAGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAGGTGCCATGGC 8741 Query 72142 TCCAAGTATATGGC 72155 |||| ||| ||||| Sbjct 8742 TCCAGGTAGATGGC 8755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670687229695000