Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq34970 93.3 6e-14 seq14405 84.2 3e-11 >seq34970 Length=16158 Score = 93.3 bits (102), Expect = 6e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 97209 GAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGC 97268 |||||||| ||||| ||||| ||||||||||| || || | || |||||||| | Sbjct 7944 GAGACTGGCACTCCTTACATGCTCTACAAGGACTCCTGCAACAGGAAGAGCAACCAGCAG 7885 Query 97269 CACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 || |||||||||||||| || ||| |||||||| || ||||| |||||| || Sbjct 7884 AACCTGGGCACCATCAAGTGCAGCAACCTGTGCACTGAGATTGTGGAGTACACC 7831 >seq14405 Length=70954 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 || ||| |||| || || || || || || ||||||||||| |||||| ||||| || Sbjct 59640 GAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTCTCGGGTTCCTTTGCTGCT 59581 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 || |||||||| |||||| | || || ||||| |||||||| Sbjct 59580 ATATTTTGGCTGAAGAAGAGGGGCCTAATGCCTGGACTGAC 59540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740560142945000