Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq25686 168 2e-36 seq8030 96.9 8e-15 >seq25686 Length=124693 Score = 168 bits (186), Expect = 2e-36 Identities = 135/163 (83%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| ||||| | ||||| | ||||||||| Sbjct 95305 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 95246 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 95245 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 95186 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 95185 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 95143 >seq8030 Length=30207 Score = 96.9 bits (106), Expect = 8e-15 Identities = 178/259 (69%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 174073 CAGTAAATATTCTAAACGAATTATACTACAATTAAGTATTGAATGTGAAACTTGTGGAAC 174132 |||| |||| || | ||||||||||||||| | ||| |||||| | ||||| |||||| Sbjct 24580 CAGTGAATACTCCACACGAATTATACTACAGTCAAGGATTGAAGGGGAAACCGGTGGAAT 24639 Query 174133 TTTCAGCTGTTTATTATTCCAAATTTCAATATTACCAG----GAAGTAGTTGCTTTCCAC 174188 ||||| |||||| |||||| |||| | || |||| ||| | || | |||| Sbjct 24640 TTTCAACTGTTTGCCATTCCAGGTTTCTGTTTTGCCAGATGACAAGGA-TTCC---CCAC 24695 Query 174189 GCGATGAGGTAATAAGGTTTCTAACTTTCTTTATGTTTCTATCAGTATAAAATGTCTGTA 174248 || || ||| || | | | |||| ||| || |||| | || |||||| | |||| Sbjct 24696 GCAGGTTGGCAATGAGTTGTTTGACTTCCTTCATTTTTCCTTTAGCATAAAACGCCTGTG 24755 Query 174249 TTTGGTAGATACAGACATTAGGCATTACTGCACGAGATGAATTATTTTCAATTTCTGCAA 174308 ||||||| || | || |||| || |||| || || || |||||||| |||| Sbjct 24756 TTTGGTAAATGGCTGCCTTTGGCACCACCACACGGGAAGAGCAGTTCTCAATTTCAGCAA 24815 Query 174309 CTATCCTAACGTATTCACC 174327 ||| || ||||||| Sbjct 24816 AGATCTGAATTGATTCACC 24834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150603620268500