Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthisitta_20chloris_20[refseq_20GCF_5F000695815.1_202014-05-27] 53,875 sequences; 1,035,876,403 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq18334 84.2 1e-11 seq9181 82.4 4e-11 >seq18334 Length=20352 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 165 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 224 Query 11528 CCG 11530 ||| Sbjct 225 CCG 227 >seq9181 Length=1969 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 898 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 839 Query 11528 CC 11529 || Sbjct 838 CC 837 Lambda K H 0.641 0.410 0.925 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261319504469500